Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1908047 .. 1910840

Gene Structure 2794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCTTGGATCCATTCATTGATTTATAAAATAAAAGGAAAAGGATTCGACGTGAATCATTTTTCTGGAAATTCTAGAGATCTTGTAATCGTGATTGTTCATTGTACATCGTGCGATCTAACAAAAATTACTCGCATAATACTTACAAAAACACCGAAATTTTGGACTCTCTCTTTCTCTCTCTACTCTGCCTTCTCAGTCTCTCTCTCTCTCTCTCCTCTGTTGCCGGCGATTCAGCAAGTGAAGTCCAACTCAGTGAGTGATGGGTGGCGAGTTACGTTACGAGATCGCACAAAATGCCTACGTAAAGCTAGTGCTACACGCTCTCAAGCACAAGACCTCCGCCGTCAACGGCATCCTCCTCGGTCGCGTCTCCCCCCACAACGACGTCGTGGAGATCACCGATTCCGTCCCTCTCTTCCACTCCCACATCGGCCTCCTCCCCCAGCTCGATCGATCTCCCTCATCCTGATAGAGGAGCACTTTGCTGCTAAAGGAGTGAGCATAGTGGGGTATTTCCATGCTAACGAGAGGTTTGACGATCAAGAGCTCGGCGGCATTGCCAAGAATGTCGGCGATCACATTTATCGCTACCTTCCCCAAGCCGCAATTCTTTTGCTTGATAACAGGAAGCTTAAAGCTTTGTCGAAGACTAAGGACCGGAGCCCCGTAGTGCAGCTCTACACAAAGGATGCATCCAGGACTTGGAAGTTAGTTGGATCGGATGGAAACCAGTTGACCATCAAGGAGCCATCAGCAAATGTTGTTCTATTGGATTACATCTCTACCGAAAAATGGCAGGATGTTGTAGATTTCGATGATCACCTCGATGACATTAGCAAGGACTGGCTGAACCCAGAACTATTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0072546 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0172

Protein Analysis

291

Amino Acids

33.13

Weight (kDa)

9.89

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0172	PF03665	140 - 288	8e-35	Uncharacterised protein family (UPF0172)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AatII	GACGTC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	705
AccII	CGCG	1 cut(s)	370
AciI	CCGC	3 cut(s)	343, 555, 606
AclWI	GGATC	3 cut(s)	4, 17, 727
AcsI	RAATTY	2 cut(s)	70, 158
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	475, 705, 795
AgsI	TTSAA	1 cut(s)	868
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	698
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AluBI	AGCT	6 cut(s)	311, 449, 550, 634, 641, 679
AluI	AGCT	6 cut(s)	311, 449, 550, 634, 641, 679
Alw21I	GWGCWC	2 cut(s)	483, 552
Alw26I	GTCTC	2 cut(s)	205, 377
AlwI	GGATC	3 cut(s)	4, 17, 727
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	488, 676
ApoI	RAATTY	2 cut(s)	70, 158
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	2 cut(s)	392, 815
AvaII	GGWCC	1 cut(s)	658
BamHI	GGATCC	1 cut(s)	9
BanII	GRGCYC	2 cut(s)	552, 668
BbsI	GAAGAC	1 cut(s)	656
Bbv12I	GWGCWC	2 cut(s)	483, 552
BbvI	GCAGC	2 cut(s)	475, 688
BccI	CCATC	4 cut(s)	257, 719, 749, 760
BceAI	ACGGC	2 cut(s)	330, 368
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	700
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	2 cut(s)	205, 377
BfaI	CTAG	2 cut(s)	75, 312
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	4 cut(s)	489, 556, 606, 677
BlsI	GCNGC	4 cut(s)	490, 557, 607, 678
Bme1390I	CCNGG	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	3 cut(s)	11, 665, 750
BmrFI	CCNGG	1 cut(s)	700
BmsI	GCATC	3 cut(s)	364, 682, 704
BpiI	GAAGAC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 705, 795
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	733, 851
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	700
BseCI	ATCGAT	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	6 cut(s)	355, 465, 695, 697, 730, 808
BseLI	CCNNNNNNNGG	3 cut(s)	475, 705, 795
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	210, 267
BseNI	ACTGG	2 cut(s)	733, 851
BseRI	GAGGAG	4 cut(s)	207, 351, 429, 491
BseXI	GCAGC	2 cut(s)	475, 688
BseYI	CCCAGC	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	370
Bsh1285I	CGRYCG	2 cut(s)	368, 455
BshFI	GGCC	1 cut(s)	436
BshVI	ATCGAT	1 cut(s)	455
BsiEI	CGRYCG	2 cut(s)	368, 455
BsiHKAI	GWGCWC	2 cut(s)	483, 552
BsiSI	CCGG	2 cut(s)	227, 661
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	3 cut(s)	475, 705, 795
BsmAI	GTCTC	2 cut(s)	205, 377
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	436
Bsp1286I	GDGCHC	3 cut(s)	483, 552, 668
Bsp1407I	TGTACA	1 cut(s)	104
BspACI	CCGC	3 cut(s)	343, 555, 606
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	2 cut(s)	209, 266
BspDI	ATCGAT	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	11, 665, 750
BspPI	GGATC	3 cut(s)	4, 17, 727
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	733, 851
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	362
BssNI	GRCGYC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	700
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	196, 253, 654
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	6 cut(s)	355, 465, 695, 697, 730, 808
BstFNI	CGCG	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	205, 377
BstMCI	CGRYCG	2 cut(s)	368, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	698
BstSNI	TACGTA	1 cut(s)	305
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	475, 688
BstV2I	GAAGAC	1 cut(s)	656
BstX2I	RGATCY	2 cut(s)	9, 79
BstYI	RGATCY	2 cut(s)	9, 79
Bsu15I	ATCGAT	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	436
BsuTUI	ATCGAT	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	6 cut(s)	355, 465, 695, 697, 730, 808
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	658
ClaI	ATCGAT	1 cut(s)	455
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	1 cut(s)	521
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	196, 253, 654
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	550
Eco105I	TACGTA	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	552, 668
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	550
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	697
EcoT38I	GRGCYC	2 cut(s)	552, 668
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	1 cut(s)	524
FaiI	YATR	4 cut(s)	27, 137, 506, 522
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	4 cut(s)	489, 556, 606, 677
FokI	GGATG	6 cut(s)	342, 452, 682, 704, 737, 815
FriOI	GRGCYC	2 cut(s)	552, 668
Fsp4HI	GCNGC	4 cut(s)	489, 556, 606, 677
FspBI	CTAG	2 cut(s)	75, 312
GluI	GCNGC	4 cut(s)	489, 556, 606, 677
GsaI	CCCAGC	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	436
HapII	CCGG	2 cut(s)	227, 661
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	524
HincII	GTYRAC	2 cut(s)	350, 738
HindII	GTYRAC	2 cut(s)	350, 738
HindIII	AAGCTT	2 cut(s)	632, 639
HinfI	GANTC	5 cut(s)	45, 55, 166, 232, 405
HpaII	CCGG	2 cut(s)	227, 661
HphI	GGTGA	2 cut(s)	392, 815
Hpy166II	GTNNAC	2 cut(s)	350, 738
Hpy188I	TCNGA	1 cut(s)	724
Hpy188III	TCNNGA	5 cut(s)	66, 75, 91, 469, 545
Hpy8I	GTNNAC	2 cut(s)	350, 738
Hpy99I	CGWCG	3 cut(s)	53, 390, 393
HpyAV	CCTTC	2 cut(s)	202, 605
HpyCH4IV	ACGT	4 cut(s)	51, 278, 304, 388
HpyCH4V	TGCA	2 cut(s)	676, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	3 cut(s)	196, 253, 654
HpySE526I	ACGT	4 cut(s)	51, 278, 304, 388
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	1 cut(s)	524
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	820
LmnI	GCTCC	3 cut(s)	478, 663, 748
Lsp1109I	GCAGC	2 cut(s)	475, 688
LweI	GCATC	3 cut(s)	364, 682, 704
MaeI	CTAG	2 cut(s)	75, 312
MaeII	ACGT	4 cut(s)	51, 278, 304, 388
MaeIII	GTNAC	2 cut(s)	274, 279
MboII	GAAGA	2 cut(s)	410, 661
MflI	RGATCY	2 cut(s)	9, 79
MhlI	GDGCHC	3 cut(s)	483, 552, 668
MluCI	AATT	4 cut(s)	70, 126, 158, 609
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	273, 697
Mph1103I	ATGCAT	1 cut(s)	697
MroNI	GCCGGC	1 cut(s)	226
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	828
MspI	CCGG	2 cut(s)	227, 661
MspR9I	CCNGG	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	700
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	297
NaeI	GCCGGC	1 cut(s)	228
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	3 cut(s)	11, 665, 750
NmeAIII	GCCGAG	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	697
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	4 cut(s)	45, 55, 232, 405
PflMI	CCANNNNNTGG	1 cut(s)	705
PfoI	TCCNGGA	1 cut(s)	698
PkrI	GCNGC	4 cut(s)	490, 557, 607, 678
Ple19I	CGATCG	1 cut(s)	455
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	11, 665, 750
PspPI	GGNCC	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	9, 79
PvuI	CGATCG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	828
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	4 cut(s)	489, 556, 606, 677
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	3 cut(s)	483, 552, 668
SfaNI	GCATC	3 cut(s)	364, 682, 704
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SnaBI	TACGTA	1 cut(s)	305
Sse9I	AATT	4 cut(s)	70, 126, 158, 609
SsiI	CCGC	3 cut(s)	343, 555, 606
SspMI	CTAG	2 cut(s)	75, 312
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	698
TaiI	ACGT	4 cut(s)	54, 281, 307, 391
TaqI	TCGA	6 cut(s)	48, 451, 455, 647, 816, 828
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	4 cut(s)	70, 126, 158, 609
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	2 cut(s)	558, 608
TfiI	GAWTC	4 cut(s)	45, 55, 232, 405
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	488, 676
TspDTI	ATGAA	2 cut(s)	6, 89
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	705
VpaK11BI	GGWCC	1 cut(s)	658
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	2 cut(s)	70, 158
XbaI	TCTAGA	1 cut(s)	74
XspI	CTAG	2 cut(s)	75, 312
ZraI	GACGTC	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.