pycom03g02540

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
1912262 .. 1916789
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2376 bp
ATGCTTATCCTGATCAACCACTTCACCCGACTCTTCTCCAGTACATCCCACCACAAGTTCTTTCCACCAGTTTTGTGGAGAATGTTCTTGGTCACCTTTTCGCAGCCCATTCCAGCGGTCTTAAGGATGCGTTATTTTGATAAAGCTTGGGAGTTGATGGCCAAAATAAGCAGGATGCACCCGTCCTTGCTTACCCTTAAGTCAATGAGCATCATTCTGTCGAAAATAGCAAAATTTCAATCGTATGAAGATGTCCTTGAAGCATTTGAAAAACTGGAGAATGATATTTTCGCTGGGAGGAAGTTTGGTACTGATGAGTTCAACGTACTCCTTAGAGCATTTTGCACCGAAAGGCAGATGAAGGAGGCACGTTCAGTGTTCATGAAGATGCGTTCTCGCTTTTCACCCAACACCAAGACCATGAATATCTTGCTCCTGGGGTTCAAGGAATCAGGAGATATTACTGCAATAGAACTCTTTTACCATGAACTGGTTAAAAGAGGCTTTAAGCCAAACAGTGTAACTTATAACATCAGAATCGACGCTTACTGTAAGAAAAGTTGCTTTGCTGACGGATTGAGGCTTTTTGAAGGAATGGAACAGGAAAACTTGTCGGTTGCTCGAAATCCAATCAAGGCACGACAGTTATTTGATGAGATTCGCTTGAGAAATTTGCTTGCGGATACTGGGGCTTACAATGCTTTGATGAGTTCACTTATTAGATCAAGAGATCTGAAGTCGGCAGTCGCCTTGATGGATGAGATGGAAAAGAATCATATTGAGCATGATGATATGACTTACCACACCATCTTCTCTGGCTTGATGAGGACATATGATATCGAAGGCGTTTCCAGACTATATCATAAAATGGTTGACAGAAGTTTTGTGCCCAAAACGCGAACGGTGGTGATGATAATGAAATTTTTCTGTGTAAATCATCAGCTTGATTCGGGTTTGCATTTGTGGCAATACCTAGTGGAGAAAGGATATTGTCCTCACGGTCATGCATTGGACCTTATGTTAACGGGATTGTGCTCCCGCGGTAGGGTAAACGAAGCATTTGAGTGCTCGACACAAATGGTGGAGAGAAGGAGACGTATGAGTGAAGCTTCATTTCGGACATTGGAAAGCTTTCTGGTTCAGGAAGGGGTACGGTTGACATTTCACATGCTGTTACACCCTCCAATATATATGGGGAAAAATAATGTTCTCCACCACTCAAAAACCCTAATCTTGTTATTCTCTCTGCGCTCCCAACTCTTAAAGTTCATACCTTTTTTGTTGATCAAATTTTCCCGAGAAAATCCGATATCGAGCGCAATGGGTTCGAAGTCGAATGCCGGCCATCCTCACTCAGGCGATGGCGCCAGCCCTGGAAAGATCTTCATCGGTGGATTGGCAAAAGACACTACAAATGCAACATTTACCAAGCACTTTGGGAAATATGGAGAGATAGTGGACTCAGTGATAATGAAAGATCGCTTCACCGGTACCCCACGGGGATTTGGGTTTATTACCTATGCCGATCCATCAGTTGTTGACGCAGTTATTGAGGAAACTCATGTTATTAATGGAAAGCAGGTTGAGATCAAGCGAACCATTCCGAAAGGTCAAGGGCAATCAAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGCATTCCATCATCAGTCTCTGAGGATGAGTTGAAAAGTTTCTTCTCTGAGTATGGGAAAGTGGTTGAACACCAGATCATACGAGACCATGAGACCAATCGTTCTAGAGGCTTTGGGTTTGTTATTTTTGACAGTGAGGAAGTTGTAGATGAATTGTTATCTAAAGGAAACATGATTGATATGGAGGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAATCCACCATCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCTTTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGTAGTTTTGATGGAGGGTTTGGCCCTGGACCCTATAGGACACCAGGTGGTCTTGGTGGTAGATATGGTGGTGGTTATGGCTATGGTTATGGTAGCGATAGTGGCGAATTTGGCAGTGGTTATGGGAATTTTGGCAGCAGTAGCTTAGGTGGCTATCGAGGTGAGACTTCCCTTGGTTATTCTAGCCGCTTTGGACCATATGGTGGTGGTTATGGTGGGGGCTATAATGCGAGTGGTTTAGGTGGTTATGGCCGAGGCAATGAAGGCTATGGAAGTTATGGAGGTTCAAACTATGGTGGTGGCTATGACTCTGGTCCTGGTGCTACTTATGGTGGAGGAGCAGGTGGACCATATGGAAGGGGGGGATATAGTAGCAGTAGTCGGTACCACCCCTACGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

792

Amino Acids

87.95

Weight (kDa)

9.27

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 107 - 148 3.8e-07 PPR repeat family
PPR_2 PF13041 136 - 185 4.1e-11 PPR repeat family
PPR_2 PF13041 228 - 275 7.3e-10 PPR repeat family
RRM_1 PF00076 461 - 520 2.5e-13 RNA recognition motif
RRM_7 PF16367 547 - 609 3.8e-09 RNA recognition motif
RRM_1 PF00076 549 - 617 8e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AarI CACCTGC 1 cut(s) 2303
Acc36I ACCTGC 2 cut(s) 1570, 2303
Acc65I GGTACC 3 cut(s) 1490, 1844, 2355
AccB1I GGYRCC 4 cut(s) 1364, 1490, 1844, 2355
AccB7I CCANNNNNTGG 2 cut(s) 490, 2174
AccII CGCG 2 cut(s) 898, 1041
AciI CCGC 5 cut(s) 116, 680, 1039, 1041, 2158
AclWI GGATC 1 cut(s) 1520
AcoI YGGCCR 3 cut(s) 159, 1342, 2221
AcsI RAATTY 6 cut(s) 233, 670, 920, 1289, 2078, 2098
AcuI CTGAAG 1 cut(s) 755
AcyI GRCGYC 1 cut(s) 1365
AdeI CACNNNGTG 1 cut(s) 2018
AfaI GTAC 7 cut(s) 43, 310, 327, 1152, 1492, 1846, 2357
AfiI CCNNNNNNNGG 7 cut(s) 490, 1044, 1045, 1355, 1910, 2174, 2370
AflII CTTAAG 2 cut(s) 121, 197
AgeI ACCGGT 1 cut(s) 1487
AjnI CCWGG 6 cut(s) 435, 1372, 1848, 1996, 2014, 2287
AluBI AGCT 6 cut(s) 146, 943, 1109, 1131, 1868, 2115
AluI AGCT 6 cut(s) 146, 943, 1109, 1131, 1868, 2115
Alw21I GWGCWC 2 cut(s) 1037, 1070
Alw26I GTCTC 5 cut(s) 1087, 1678, 1734, 1742, 2129
AlwI GGATC 1 cut(s) 1520
AlwNI CAGNNNCTG 1 cut(s) 1676
Ama87I CYCGRG 1 cut(s) 1296
AoxI GGCC 4 cut(s) 159, 1342, 1993, 2221
ApeKI GCWGC 2 cut(s) 103, 2106
ApoI RAATTY 6 cut(s) 233, 670, 920, 1289, 2078, 2098
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AseI ATTAAT 1 cut(s) 1569
AsiGI ACCGGT 1 cut(s) 1487
Asp700I GAANNNNTTC 3 cut(s) 923, 1131, 1694
Asp718I GGTACC 3 cut(s) 1490, 1844, 2355
AspLEI GCGC 3 cut(s) 1251, 1319, 1367
AspS9I GGNCC 6 cut(s) 1012, 1994, 2000, 2165, 2285, 2318
AsuHPI GGTGA 6 cut(s) 16, 85, 396, 919, 1477, 2144
AsuII TTCGAA 1 cut(s) 1328
AvaI CYCGRG 1 cut(s) 1296
AvaII GGWCC 5 cut(s) 1012, 2000, 2165, 2285, 2318
BaeGI GKGCMC 1 cut(s) 891
BaeI ACNNNNGTAYC 2 cut(s) 1836, 1869
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 4 cut(s) 1364, 1490, 1844, 2355
BanII GRGCYC 1 cut(s) 1930
Bbv12I GWGCWC 2 cut(s) 1037, 1070
BbvI GCAGC 2 cut(s) 115, 2118
BcgI CGANNNNNNTGC 2 cut(s) 1308, 1342
BciT130I CCWGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
BciVI GTATCC 1 cut(s) 676
BclI TGATCA 2 cut(s) 12, 1284
BcoDI GTCTC 5 cut(s) 1087, 1678, 1734, 1742, 2129
BfaI CTAG 4 cut(s) 974, 1761, 1923, 2154
BfmI CTRYAG 1 cut(s) 2005
BfoI RGCGCY 1 cut(s) 1368
BfrI CTTAAG 2 cut(s) 121, 197
BfuAI ACCTGC 2 cut(s) 1570, 2303
BfuI GTATCC 1 cut(s) 676
BglII AGATCT 2 cut(s) 730, 1380
BisI GCNGC 3 cut(s) 104, 2107, 2158
BlsI GCNGC 3 cut(s) 105, 2108, 2159
Bme1390I CCNGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
Bme18I GGWCC 5 cut(s) 1012, 2000, 2165, 2285, 2318
BmeT110I CYCGRG 1 cut(s) 1296
BmgT120I GGNCC 6 cut(s) 1012, 1994, 2000, 2165, 2285, 2318
BmiI GGNNCC 5 cut(s) 1366, 1492, 1846, 2002, 2357
BmrFI CCNGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 4 cut(s) 117, 165, 219, 378
BmuI ACTGGG 1 cut(s) 696
BoxI GACNNNNGTC 1 cut(s) 2283
BpmI CTGGAG 2 cut(s) 22, 296
Bpu10I CCTNAGC 1 cut(s) 2116
Bpu14I TTCGAA 1 cut(s) 1328
BpuEI CTTGAG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 1385
BsaHI GRCGYC 1 cut(s) 1365
BsaI GGTCTC 2 cut(s) 1734, 1742
BsaJI CCNNGG 8 cut(s) 436, 1039, 1372, 1496, 1848, 1996, 2143, 2224
BsaWI WCCGGW 1 cut(s) 1487
BsaXI ACNNNNNCTCC 2 cut(s) 1440, 1470
Bsc4I CCNNNNNNNGG 7 cut(s) 490, 1044, 1045, 1355, 1910, 2174, 2370
Bse118I RCCGGY 2 cut(s) 1340, 1487
Bse1I ACTGG 5 cut(s) 39, 68, 279, 495, 691
Bse3DI GCAATG 2 cut(s) 1326, 2236
Bse8I GATNNNNATC 1 cut(s) 1385
BseBI CCWGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
BseDI CCNNGG 8 cut(s) 436, 1039, 1372, 1496, 1848, 1996, 2143, 2224
BseGI GGATG 6 cut(s) 44, 132, 180, 763, 1345, 1687
BseJI GATNNNNATC 1 cut(s) 1385
BseLI CCNNNNNNNGG 7 cut(s) 490, 1044, 1045, 1355, 1910, 2174, 2370
BseMI GCAATG 2 cut(s) 1326, 2236
BseMII CTCAG 4 cut(s) 1368, 1476, 1668, 1695
BseNI ACTGG 5 cut(s) 39, 68, 279, 495, 691
BseRI GAGGAG 1 cut(s) 2322
BseSI GKGCMC 1 cut(s) 891
BseXI GCAGC 2 cut(s) 115, 2118
BseYI CCCAGC 1 cut(s) 293
Bsh1236I CGCG 2 cut(s) 898, 1041
BshFI GGCC 4 cut(s) 161, 1344, 1995, 2223
BshNI GGYRCC 4 cut(s) 1364, 1490, 1844, 2355
BshTI ACCGGT 1 cut(s) 1487
BsiHKAI GWGCWC 2 cut(s) 1037, 1070
BsiHKCI CYCGRG 1 cut(s) 1296
BsiSI CCGG 2 cut(s) 1341, 1488
BslI CCNNNNNNNGG 7 cut(s) 490, 1044, 1045, 1355, 1910, 2174, 2370
BsmAI GTCTC 5 cut(s) 1087, 1678, 1734, 1742, 2129
BsmBI CGTCTC 1 cut(s) 1087
BsmI GAATGC 2 cut(s) 1342, 1659
BsnI GGCC 4 cut(s) 161, 1344, 1995, 2223
Bso31I GGTCTC 2 cut(s) 1734, 1742
BsoBI CYCGRG 1 cut(s) 1296
Bsp119I TTCGAA 1 cut(s) 1328
Bsp1286I GDGCHC 4 cut(s) 891, 1037, 1070, 1930
BspACI CCGC 5 cut(s) 116, 680, 1039, 1041, 2158
BspANI GGCC 4 cut(s) 161, 1344, 1995, 2223
BspCNI CTCAG 4 cut(s) 1367, 1475, 1669, 1696
BspFNI CGCG 2 cut(s) 898, 1041
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 5 cut(s) 1366, 1492, 1846, 2002, 2357
BspMI ACCTGC 2 cut(s) 1570, 2303
BspPI GGATC 1 cut(s) 1520
BspT104I TTCGAA 1 cut(s) 1328
BspT107I GGYRCC 4 cut(s) 1364, 1490, 1844, 2355
BspTI CTTAAG 2 cut(s) 121, 197
BspTNI GGTCTC 2 cut(s) 1734, 1742
BsrDI GCAATG 2 cut(s) 1326, 2236
BsrFI RCCGGY 2 cut(s) 1340, 1487
BsrI ACTGG 5 cut(s) 39, 68, 279, 495, 691
BssAI RCCGGY 2 cut(s) 1340, 1487
BssECI CCNNGG 8 cut(s) 436, 1039, 1372, 1496, 1848, 1996, 2143, 2224
BssNI GRCGYC 1 cut(s) 1365
BssT1I CCWWGG 1 cut(s) 2143
Bst2UI CCWGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
Bst4CI ACNGT 7 cut(s) 518, 551, 645, 904, 1001, 1155, 1790
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 1365
BstAFI CTTAAG 2 cut(s) 121, 197
BstBI TTCGAA 1 cut(s) 1328
BstC8I GCNNGC 3 cut(s) 678, 1342, 1369
BstDEI CTNAG 6 cut(s) 332, 1354, 1462, 1677, 1704, 2116
BstDSI CCRYGG 2 cut(s) 1039, 1496
BstEII GGTNACC 1 cut(s) 91
BstENI CCTNNNNNAGG 2 cut(s) 1353, 2368
BstF5I GGATG 6 cut(s) 44, 132, 180, 763, 1345, 1687
BstFNI CGCG 2 cut(s) 898, 1041
BstH2I RGCGCY 1 cut(s) 1368
BstHHI GCGC 3 cut(s) 1251, 1319, 1367
BstMAI GTCTC 5 cut(s) 1087, 1678, 1734, 1742, 2129
BstMWI GCNNNNNNNGC 8 cut(s) 698, 895, 964, 2073, 2082, 2112, 2121, 2235
BstNI CCWGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
BstNSI RCATGY 1 cut(s) 1171
BstPAI GACNNNNGTC 1 cut(s) 2283
BstPI GGTNACC 1 cut(s) 91
BstSCI CCNGG 6 cut(s) 435, 1372, 1848, 1996, 2014, 2287
BstSFI CTRYAG 1 cut(s) 2005
BstSLI GKGCMC 1 cut(s) 891
BstUI CGCG 2 cut(s) 898, 1041
BstV1I GCAGC 2 cut(s) 115, 2118
BstX2I RGATCY 2 cut(s) 730, 1380
BstXI CCANNNNNNTGG 1 cut(s) 75
BstYI RGATCY 2 cut(s) 730, 1380
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 4 cut(s) 161, 1344, 1995, 2223
BtgI CCRYGG 2 cut(s) 1039, 1496
BtgZI GCGATG 1 cut(s) 1374
BtsCI GGATG 6 cut(s) 44, 132, 180, 763, 1345, 1687
BtsI GCAGTG 1 cut(s) 2092
BtsIMutI CAGTG 5 cut(s) 381, 523, 1470, 1795, 2092
BveI ACCTGC 2 cut(s) 1570, 2303
Cac8I GCNNGC 3 cut(s) 678, 1342, 1369
CaiI CAGNNNCTG 1 cut(s) 1676
CciI TCATGA 1 cut(s) 381
CfoI GCGC 3 cut(s) 1251, 1319, 1367
Cfr10I RCCGGY 2 cut(s) 1340, 1487
Cfr13I GGNCC 6 cut(s) 1012, 1994, 2000, 2165, 2285, 2318
Cfr42I CCGCGG 1 cut(s) 1042
CseI GACGC 2 cut(s) 551, 1550
CsiI ACCWGGT 1 cut(s) 2014
Csp6I GTAC 7 cut(s) 42, 309, 326, 1151, 1491, 1845, 2356
CspAI ACCGGT 1 cut(s) 1487
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 9 cut(s) 382, 421, 485, 785, 1004, 1168, 1562, 1745, 1828
CviQI GTAC 7 cut(s) 42, 309, 326, 1151, 1491, 1845, 2356
DdeI CTNAG 6 cut(s) 332, 1354, 1462, 1677, 1704, 2116
DinI GGCGCC 1 cut(s) 1366
DraIII CACNNNGTG 1 cut(s) 2018
EaeI YGGCCR 3 cut(s) 159, 1342, 2221
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 2143
Eco24I GRGCYC 1 cut(s) 1930
Eco31I GGTCTC 2 cut(s) 1734, 1742
Eco32I GATATC 2 cut(s) 838, 1311
Eco47I GGWCC 5 cut(s) 1012, 2000, 2165, 2285, 2318
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 1296
Eco91I GGTNACC 1 cut(s) 91
EcoNI CCTNNNNNAGG 2 cut(s) 1353, 2368
EcoO65I GGTNACC 1 cut(s) 91
EcoRII CCWGG 6 cut(s) 435, 1372, 1848, 1996, 2014, 2287
EcoRV GATATC 2 cut(s) 838, 1311
EcoT14I CCWWGG 1 cut(s) 2143
EcoT22I ATGCAT 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 1930
EgeI GGCGCC 1 cut(s) 1366
EheI GGCGCC 1 cut(s) 1366
ErhI CCWWGG 1 cut(s) 2143
Esp3I CGTCTC 1 cut(s) 1087
FaeI CATG 9 cut(s) 385, 424, 488, 788, 1007, 1171, 1565, 1748, 1831
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 9 cut(s) 381, 420, 484, 784, 1003, 1167, 1561, 1744, 1827
FauI CCCGC 1 cut(s) 1046
FauNDI CATATG 4 cut(s) 832, 1909, 2170, 2323
FbaI TGATCA 2 cut(s) 12, 1284
Fnu4HI GCNGC 3 cut(s) 104, 2107, 2158
FokI GGATG 6 cut(s) 31, 139, 187, 770, 1332, 1694
FriOI GRGCYC 1 cut(s) 1930
Fsp4HI GCNGC 3 cut(s) 104, 2107, 2158
FspBI CTAG 4 cut(s) 974, 1761, 1923, 2154
GlaI GCGC 3 cut(s) 1250, 1318, 1366
GluI GCNGC 3 cut(s) 104, 2107, 2158
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 2 cut(s) 22, 296
HaeII RGCGCY 1 cut(s) 1368
HaeIII GGCC 4 cut(s) 161, 1344, 1995, 2223
HapII CCGG 2 cut(s) 1341, 1488
HgaI GACGC 2 cut(s) 551, 1550
HhaI GCGC 3 cut(s) 1251, 1319, 1367
Hin1I GRCGYC 1 cut(s) 1365
Hin1II CATG 9 cut(s) 385, 424, 488, 788, 1007, 1171, 1565, 1748, 1831
Hin6I GCGC 3 cut(s) 1249, 1317, 1365
HinP1I GCGC 3 cut(s) 1249, 1317, 1365
HincII GTYRAC 4 cut(s) 874, 1023, 1158, 1540
HindII GTYRAC 4 cut(s) 874, 1023, 1158, 1540
HindIII AAGCTT 3 cut(s) 144, 1107, 1129
HinfI GANTC 8 cut(s) 30, 449, 537, 658, 772, 947, 1460, 2279
HpaI GTTAAC 1 cut(s) 1023
HpaII CCGG 2 cut(s) 1341, 1488
HphI GGTGA 6 cut(s) 16, 85, 396, 919, 1477, 2144
Hpy166II GTNNAC 8 cut(s) 713, 874, 1023, 1051, 1158, 1459, 1540, 2318
Hpy188I TCNGA 7 cut(s) 536, 735, 1119, 1308, 1605, 1678, 1705
Hpy188III TCNNGA 9 cut(s) 10, 382, 453, 726, 852, 1142, 1296, 1761, 1861
Hpy8I GTNNAC 8 cut(s) 713, 874, 1023, 1051, 1158, 1459, 1540, 2318
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 8 cut(s) 355, 584, 836, 1083, 1139, 2228, 2322, 2364
HpyCH4III ACNGT 7 cut(s) 518, 551, 645, 904, 1001, 1155, 1790
HpyCH4IV ACGT 3 cut(s) 324, 370, 1096
HpyCH4V TGCA 7 cut(s) 178, 345, 467, 958, 1007, 1418, 1907
HpyF10VI GCNNNNNNNGC 8 cut(s) 698, 895, 964, 2073, 2082, 2112, 2121, 2235
HpyF3I CTNAG 6 cut(s) 332, 1354, 1462, 1677, 1704, 2116
HpySE526I ACGT 3 cut(s) 324, 370, 1096
Hsp92I GRCGYC 1 cut(s) 1365
Hsp92II CATG 9 cut(s) 385, 424, 488, 788, 1007, 1171, 1565, 1748, 1831
HspAI GCGC 3 cut(s) 1249, 1317, 1365
KasI GGCGCC 1 cut(s) 1364
KpnI GGTACC 3 cut(s) 1494, 1848, 2359
KroI GCCGGC 1 cut(s) 1340
KroNI GCCGGC 1 cut(s) 1342
Ksp22I TGATCA 2 cut(s) 12, 1284
KspAI GTTAAC 1 cut(s) 1023
KspI CCGCGG 1 cut(s) 1042
LmnI GCTCC 5 cut(s) 438, 1040, 1256, 1906, 2309
Lsp1109I GCAGC 2 cut(s) 115, 2118
LweI GCATC 4 cut(s) 117, 165, 219, 378
MabI ACCWGGT 1 cut(s) 2014
MaeI CTAG 4 cut(s) 974, 1761, 1923, 2154
MaeII ACGT 3 cut(s) 324, 370, 1096
MaeIII GTNAC 3 cut(s) 91, 520, 1173
MboII GAAGA 7 cut(s) 25, 260, 397, 802, 1375, 1654, 1690
MflI RGATCY 2 cut(s) 730, 1380
MhlI GDGCHC 4 cut(s) 891, 1037, 1070, 1930
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 8 cut(s) 233, 670, 920, 1289, 1808, 1918, 2078, 2098
MluNI TGGCCA 1 cut(s) 161
Mly113I GGCGCC 1 cut(s) 1365
MlyI GAGTC 3 cut(s) 24, 1454, 2273
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 1009
MroNI GCCGGC 1 cut(s) 1340
MroXI GAANNNNTTC 3 cut(s) 923, 1131, 1694
MscI TGGCCA 1 cut(s) 161
MseI TTAA 8 cut(s) 122, 198, 495, 507, 1022, 1262, 1569, 1632
MslI CAYNNNNRTG 3 cut(s) 386, 1002, 1063
Msp20I TGGCCA 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 116, 1041
MspCI CTTAAG 2 cut(s) 121, 197
MspI CCGG 2 cut(s) 1341, 1488
MspR9I CCNGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
Mva1269I GAATGC 2 cut(s) 1342, 1659
MvaI CCWGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
MvnI CGCG 2 cut(s) 898, 1041
MwoI GCNNNNNNNGC 8 cut(s) 698, 895, 964, 2073, 2082, 2112, 2121, 2235
NaeI GCCGGC 1 cut(s) 1342
NarI GGCGCC 1 cut(s) 1365
NdeI CATATG 4 cut(s) 832, 1909, 2170, 2323
NgoMIV GCCGGC 1 cut(s) 1340
NlaIII CATG 9 cut(s) 385, 424, 488, 788, 1007, 1171, 1565, 1748, 1831
NlaIV GGNNCC 5 cut(s) 1366, 1492, 1846, 2002, 2357
NmeAIII GCCGAG 1 cut(s) 2249
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 1009
NspI RCATGY 1 cut(s) 1171
NspV TTCGAA 1 cut(s) 1328
PagI TCATGA 1 cut(s) 381
PaqCI CACCTGC 1 cut(s) 2303
PctI GAATGC 2 cut(s) 1342, 1659
PdiI GCCGGC 1 cut(s) 1342
PdmI GAANNNNTTC 3 cut(s) 923, 1131, 1694
PfeI GAWTC 5 cut(s) 449, 537, 658, 772, 947
PflMI CCANNNNNTGG 2 cut(s) 490, 2174
PinAI ACCGGT 1 cut(s) 1487
PkrI GCNGC 3 cut(s) 105, 2108, 2159
PleI GAGTC 3 cut(s) 24, 1454, 2273
PluTI GGCGCC 1 cut(s) 1368
PpsI GAGTC 3 cut(s) 24, 1454, 2273
PshAI GACNNNNGTC 1 cut(s) 2283
PshBI ATTAAT 1 cut(s) 1569
PsiI TTATAA 1 cut(s) 528
Psp6I CCWGG 6 cut(s) 435, 1372, 1848, 1996, 2014, 2287
PspEI GGTNACC 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 6 cut(s) 435, 1372, 1848, 1996, 2014, 2287
PspN4I GGNNCC 5 cut(s) 1366, 1492, 1846, 2002, 2357
PspPI GGNCC 6 cut(s) 1012, 1994, 2000, 2165, 2285, 2318
PstNI CAGNNNCTG 1 cut(s) 1676
PsuI RGATCY 2 cut(s) 730, 1380
RsaI GTAC 7 cut(s) 43, 310, 327, 1152, 1492, 1846, 2357
RsaNI GTAC 7 cut(s) 42, 309, 326, 1151, 1491, 1845, 2356
RseI CAYNNNNRTG 3 cut(s) 386, 1002, 1063
SacII CCGCGG 1 cut(s) 1042
SaqAI TTAA 8 cut(s) 122, 198, 495, 507, 1022, 1262, 1569, 1632
SatI GCNGC 3 cut(s) 104, 2107, 2158
Sau96I GGNCC 6 cut(s) 1012, 1994, 2000, 2165, 2285, 2318
SchI GAGTC 3 cut(s) 24, 1454, 2273
ScrFI CCNGG 6 cut(s) 437, 1374, 1850, 1998, 2016, 2289
SduI GDGCHC 4 cut(s) 891, 1037, 1070, 1930
SexAI ACCWGGT 1 cut(s) 2014
SfaNI GCATC 4 cut(s) 117, 165, 219, 378
SfcI CTRYAG 1 cut(s) 2005
SfoI GGCGCC 1 cut(s) 1366
Sfr303I CCGCGG 1 cut(s) 1042
SfuI TTCGAA 1 cut(s) 1328
SgrBI CCGCGG 1 cut(s) 1042
SinI GGWCC 5 cut(s) 1012, 2000, 2165, 2285, 2318
SmiMI CAYNNNNRTG 3 cut(s) 386, 1002, 1063
SmlI CTYRAG 3 cut(s) 121, 197, 664
SmoI CTYRAG 3 cut(s) 121, 197, 664
Sse9I AATT 8 cut(s) 233, 670, 920, 1289, 1808, 1918, 2078, 2098
SsiI CCGC 5 cut(s) 116, 680, 1039, 1041, 2158
SspDI GGCGCC 1 cut(s) 1364
SspMI CTAG 4 cut(s) 974, 1761, 1923, 2154
StyD4I CCNGG 6 cut(s) 435, 1372, 1848, 1996, 2014, 2287
StyI CCWWGG 1 cut(s) 2143
TaaI ACNGT 7 cut(s) 518, 551, 645, 904, 1001, 1155, 1790
TaiI ACGT 3 cut(s) 327, 373, 1099
TaqI TCGA 9 cut(s) 221, 540, 622, 840, 1070, 1313, 1328, 1334, 2128
TasI AATT 8 cut(s) 233, 670, 920, 1289, 1808, 1918, 2078, 2098
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 2160
TfiI GAWTC 5 cut(s) 449, 537, 658, 772, 947
Tru1I TTAA 8 cut(s) 122, 198, 495, 507, 1022, 1262, 1569, 1632
Tru9I TTAA 8 cut(s) 122, 198, 495, 507, 1022, 1262, 1569, 1632
TscAI CASTG 5 cut(s) 381, 523, 1470, 1795, 2092
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 103, 2106
Tsp45I GTSAC 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 5 cut(s) 381, 523, 1470, 1795, 2092
Van91I CCANNNNNTGG 2 cut(s) 490, 2174
Vha464I CTTAAG 2 cut(s) 121, 197
VpaK11BI GGWCC 5 cut(s) 1012, 2000, 2165, 2285, 2318
VspI ATTAAT 1 cut(s) 1569
XagI CCTNNNNNAGG 2 cut(s) 1353, 2368
XapI RAATTY 6 cut(s) 233, 670, 920, 1289, 2078, 2098
XbaI TCTAGA 1 cut(s) 1760
XceI RCATGY 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 72
XmnI GAANNNNTTC 3 cut(s) 923, 1131, 1694
XspI CTAG 4 cut(s) 974, 1761, 1923, 2154
Zsp2I ATGCAT 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.