Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2810201 .. 2810578

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGATTTGTACAGTTTTCTTGTGTTAACGTTTCAAAGACGGTGGAAGCTGAGCGCATTTCAGTTGATCATGTTGCCCATCTTAAACCATCTGATGGAGGTTCAGCAGCAACTCAGTTCCATTGCACCGCATCTTGTTTCCTACAGCGACTCAGTTCAGCAGCAACTCAGTTCATTTCAGTTGATCATGCTTCCTACAACTCCATCTTGTTCAGTTGCACTGCATTATCTTTTTGGTTAAATAAAATCGAACCACCAGGACGCCGATTCCTGAAATTTAGAACTAAATTCATATCGTTTCAAGGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0051603 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

9.13

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	1 cut(s)	129
AclI	AACGTT	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	275, 287
AcyI	GRCGYC	1 cut(s)	262
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	36, 302
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	107, 161
ApoI	RAATTY	2 cut(s)	275, 287
AspLEI	GCGC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	119, 173
BccI	CCATC	4 cut(s)	87, 89, 97, 212
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	2 cut(s)	67, 184
BfaI	CTAG	1 cut(s)	310
BfmI	CTRYAG	1 cut(s)	143
BisI	GCNGC	2 cut(s)	108, 162
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	2 cut(s)	109, 163
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	140
Bpu1102I	GCTNAGC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	4 cut(s)	42, 128, 166, 182
BseXI	GCAGC	2 cut(s)	119, 173
BslI	CCNNNNNNNGG	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	67, 184
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	129
BspCNI	CTCAG	4 cut(s)	43, 127, 165, 181
BsrDI	GCAATG	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	10
BssMI	GATC	2 cut(s)	67, 184
BssNI	GRCGYC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	15, 43
BstACI	GRCGYC	1 cut(s)	262
BstAUI	TGTACA	1 cut(s)	10
BstDEI	CTNAG	4 cut(s)	51, 114, 152, 168
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	2 cut(s)	70, 187
BstMBI	GATC	2 cut(s)	67, 184
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	119, 173
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CfoI	GCGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	2 cut(s)	71, 188
CviJI	RGCY	1 cut(s)	50
CviKI_1	RGCY	1 cut(s)	50
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	4 cut(s)	51, 114, 152, 168
DpnI	GATC	2 cut(s)	69, 186
DpnII	GATC	2 cut(s)	67, 184
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	74, 191
FaiI	YATR	3 cut(s)	72, 189, 293
FatI	CATG	2 cut(s)	70, 187
FbaI	TGATCA	2 cut(s)	67, 184
Fnu4HI	GCNGC	2 cut(s)	108, 162
Fsp4HI	GCNGC	2 cut(s)	108, 162
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	108, 162
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	74, 191
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	150, 267, 306
HpaI	GTTAAC	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	15, 43
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	126, 219, 224
HpyF3I	CTNAG	4 cut(s)	51, 114, 152, 168
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	74, 191
HspAI	GCGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	67, 184
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	67, 184
LpnPI	CCDG	3 cut(s)	243, 270, 284
Lsp1109I	GCAGC	2 cut(s)	119, 173
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	1 cut(s)	310
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	69, 186
MboI	GATC	2 cut(s)	67, 184
MluCI	AATT	2 cut(s)	275, 287
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	1 cut(s)	92
MseI	TTAA	3 cut(s)	27, 84, 239
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	67, 184
NlaIII	CATG	2 cut(s)	74, 191
PfeI	GAWTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	109, 163
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	27, 84, 239
SatI	GCNGC	2 cut(s)	108, 162
Sau3AI	GATC	2 cut(s)	67, 184
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	3 cut(s)	33, 52, 103
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	143
SgeI	CNNG	8 cut(s)	33, 83, 147, 200, 220, 269, 270, 283
Sse9I	AATT	2 cut(s)	275, 287
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	15, 43
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	249
TasI	AATT	2 cut(s)	275, 287
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	3 cut(s)	27, 84, 239
Tru9I	TTAA	3 cut(s)	27, 84, 239
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	2 cut(s)	107, 161
TspDTI	ATGAA	2 cut(s)	163, 280
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	2 cut(s)	275, 287
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.