pycom03g03610

CBS domain-containing protein CBSX3

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
2879455 .. 2879926
472 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGACTGAGGAGAACAAGCTTATCACTGTCACCCCTGACACCAAAGTTTTGCGGGCAATGCAACTCATGACAGGTATTATCTTCTGCTTCTTGTTACAGAAGTTTCCAACTCAAACGCACATTCCAGTAATGGACAACGGGAAAATGGTTGGAATGGTGTCCATTGGTGACGTGGTTCGTGCTGTGGTGAGTGAGCACCGGGAGGAGCTGAACCGCTTGAATGCTTTTATTCAAGGTGGTTACTAG

Protein Analysis

82

Amino Acids

9.12

Weight (kDa)

6.71

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 6 - 63 2.5e-10 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 52, 214
AgsI TTSAA 2 cut(s) 220, 233
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 2 cut(s) 19, 208
AluI AGCT 2 cut(s) 19, 208
Alw21I GWGCWC 1 cut(s) 198
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 22, 179, 199
Bbv12I GWGCWC 1 cut(s) 198
BcnI CCSGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 2 cut(s) 23, 218
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 199
BsmI GAATGC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 198
BspACI CCGC 2 cut(s) 52, 214
BspHI TCATGA 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 1 cut(s) 66
CviAII CATG 1 cut(s) 67
CviJI RGCY 2 cut(s) 19, 208
CviKI_1 RGCY 2 cut(s) 19, 208
DdeI CTNAG 1 cut(s) 6
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 244
HapII CCGG 1 cut(s) 199
Hin1II CATG 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 1 cut(s) 199
HphI GGTGA 3 cut(s) 22, 179, 199
Hpy188III TCNNGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 70
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 48, 57, 138, 212
MaeI CTAG 1 cut(s) 244
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 4 cut(s) 28, 93, 167, 239
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 130, 131
MnlI CCTC 1 cut(s) 196
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 200
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 28, 167
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 198
SetI ASST 5 cut(s) 21, 76, 174, 210, 238
SsiI CCGC 2 cut(s) 52, 214
SspMI CTAG 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 174
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 28, 167
Tsp45I GTSAC 2 cut(s) 28, 167
TspRI CASTG 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.