Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3154631 .. 3155185

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGGAAAGCGAAGCTCAACACAGAGAAACGAGAGGTGTCCAAGCTGCAGGAACGAATTTCAAGGTTGAAAAGTAGTTTAACAGACCGGGATAATGAAGTCATGGATTTGAAAATCGCAGTATCTGATGCCGAGGAGAAGATTTTCCCTGAGAAGGCACAGGTTAAGGCTGAAATATCTCGATTGCAATCAGAACGGACACATTTAGAGGAGCAGCTTAAAGATTGGGAATCACGTGGCCGTTTGTTGGAGGATGAAATCAGACAGATGAAAGCTGGAAAAGCAGAAATGGAGGAGAGACTTAAAGGCGAAATCGAGCAGTTGAAGGCAGACATCCTTGAGAGAAGCAACCAAATGGAGAATTTAAACAAGACCCTTGATGCAATGAAAACAGAAAGAGATGAGCTTAGCACCAAAGCCGCTATGCTACAGGCAGAGATGAGTTCAAGAGACGATCGATCAATGAGATTAACAAGAATTTGCAGCAAATGCAGACGGAACATCAAGAACTGCTCAACGGGGCTGAAGGGGGGCGAAAACTGGTGGAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

185

Amino Acids

21.56

Weight (kDa)

8.72

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	420
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	3 cut(s)	57, 361, 477
AcuI	CTGAAG	1 cut(s)	545
AcvI	CACGTG	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	154, 247
AgsI	TTSAA	5 cut(s)	63, 70, 112, 325, 447
AluBI	AGCT	6 cut(s)	16, 46, 217, 275, 406, 552
AluI	AGCT	6 cut(s)	16, 46, 217, 275, 406, 552
Alw26I	GTCTC	2 cut(s)	292, 444
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	3 cut(s)	46, 214, 483
ApoI	RAATTY	3 cut(s)	57, 361, 477
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	89
BbrPI	CACGTG	1 cut(s)	236
BbvI	GCAGC	3 cut(s)	33, 226, 495
BceAI	ACGGC	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	292, 444
BfmI	CTRYAG	2 cut(s)	47, 428
BisI	GCNGC	4 cut(s)	47, 215, 420, 484
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	48, 216, 421, 485
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	118, 370
Bpu1102I	GCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 247
Bse1I	ACTGG	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	259, 333
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	154, 247
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	3 cut(s)	149, 224, 308
BseXI	GCAGC	3 cut(s)	33, 226, 495
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	154, 247
BsmAI	GTCTC	2 cut(s)	292, 444
BsmBI	CGTCTC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	454, 458
Bsp1720I	GCTNAGC	1 cut(s)	407
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	454, 458
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	150, 407
BstF5I	GGATG	2 cut(s)	259, 333
BstKTI	GATC	2 cut(s)	457, 461
BstMAI	GTCTC	2 cut(s)	292, 444
BstMBI	GATC	2 cut(s)	454, 458
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 489
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	2 cut(s)	47, 428
BstV1I	GCAGC	3 cut(s)	33, 226, 495
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	457
BtsCI	GGATG	2 cut(s)	259, 333
CaiI	CAGNNNCTG	1 cut(s)	125
ClaI	ATCGAT	1 cut(s)	457
CviAII	CATG	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	150, 407
DpnI	GATC	2 cut(s)	456, 460
DpnII	GATC	2 cut(s)	454, 458
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	545
Eco72I	CACGTG	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	104, 425
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	47, 215, 420, 484
FokI	GGATG	2 cut(s)	266, 320
Fsp4HI	GCNGC	4 cut(s)	47, 215, 420, 484
GluI	GCNGC	4 cut(s)	47, 215, 420, 484
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	127, 193, 263
Hpy188III	TCNNGA	3 cut(s)	180, 447, 505
HpyAV	CCTTC	3 cut(s)	148, 319, 520
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	49, 187, 383, 483, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 489
HpyF3I	CTNAG	2 cut(s)	150, 407
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	454, 458
LmnI	GCTCC	2 cut(s)	211, 549
LpnPI	CCDG	7 cut(s)	35, 101, 146, 162, 261, 416, 526
Lsp1109I	GCAGC	3 cut(s)	33, 226, 495
LweI	GCATC	2 cut(s)	118, 370
MaeII	ACGT	1 cut(s)	235
MalI	GATC	2 cut(s)	456, 460
MboI	GATC	2 cut(s)	454, 458
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	3 cut(s)	57, 361, 477
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	28, 127, 202, 244, 286, 540
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	6 cut(s)	80, 165, 219, 303, 365, 470
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	281, 489
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	2 cut(s)	454, 458
NlaIII	CATG	1 cut(s)	106
NmeAIII	GCCGAG	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	48, 216, 421, 485
Ple19I	CGATCG	1 cut(s)	457
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	236
PspCI	CACGTG	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	125
PvuI	CGATCG	1 cut(s)	457
SaqAI	TTAA	6 cut(s)	80, 165, 219, 303, 365, 470
SatI	GCNGC	4 cut(s)	47, 215, 420, 484
Sau3AI	GATC	2 cut(s)	454, 458
ScrFI	CCNGG	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	118, 370
SfcI	CTRYAG	2 cut(s)	47, 428
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	57, 361, 477
SsiI	CCGC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	87
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	181, 315, 457
TasI	AATT	3 cut(s)	57, 361, 477
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	6 cut(s)	80, 165, 219, 303, 365, 470
Tru9I	TTAA	6 cut(s)	80, 165, 219, 303, 365, 470
TseI	GCWGC	3 cut(s)	46, 214, 483
TspDTI	ATGAA	4 cut(s)	111, 270, 284, 401
TspGWI	ACGGA	2 cut(s)	211, 511
XapI	RAATTY	3 cut(s)	57, 361, 477
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.