Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3431035 .. 3433004

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTATTATCCCAAGAAAAAGGTTGAAAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAGCTACAATGGGGGAGTTCTTGCTATTGCTGATGGTGTTTCTGCGTATGGAGCTTATGTTGGCTTGCTTATCTACCCTATGACGTTTTACGATTCGAAAAAGAACAAGAAATCCAGGGAAATTTGGTTTAAGAAACTCCAAGGACACATAATTCATCTGTTGATTTCGGAAGTTCTGATCTTCTCATTTTTTTGGCTTGGCAGTTGCGCTGAACAGGATGTGGATCCTTCATTGTTCCCCAAAGAATTGATGGCCAACGTCTCAAATCTTGTGGGAGATGAGAAGGTTTCCAATGTTGAGCTGATGGAAGGAGATACCGTAGTTATGGGCTCCGACGGACTTTTTGACAACGCTTTCGACCGTGAAATAGTTTCGAGAGTGGCCGGATACAGAGACGTTGCTGAGGCTTGTATGTGTTTCCGCACTCAAGCAAATATGATTAGAGCTAGCGCATTAGCTAATTTGGCAAACAATCATTCATTGGATTCAAACTTTGATTCTCCCTACTCCATGGAGGCTAGATCAAGGGGTTTCGAGCCTCCTTTATGGAAGAAGATTCTCGGAATGAAGCTTACAGGCACGACCTATCTCGGTTTATACCATGACGATAAGGACCTCAATCTTCGATTTCATGACGGACCTGAGTTTTCTGTTGTGCAGGTGGAAAGCCGGATGATATCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0016311 GO:0019538 GO:0035970 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0061024 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoIIE

Protein Analysis

248

Amino Acids

27.71

Weight (kDa)

5.43

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AciI	CCGC	1 cut(s)	478
AclWI	GGATC	2 cut(s)	275, 288
AcoI	YGGCCR	2 cut(s)	309, 438
AcsI	RAATTY	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	26, 546
AjnI	CCWGG	1 cut(s)	170
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	6 cut(s)	60, 110, 358, 503, 515, 628
AluI	AGCT	6 cut(s)	60, 110, 358, 503, 515, 628
Alw26I	GTCTC	2 cut(s)	322, 444
AlwI	GGATC	2 cut(s)	275, 288
AoxI	GGCC	2 cut(s)	309, 438
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	177
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 395, 415, 427
AspLEI	GCGC	2 cut(s)	266, 509
AspS9I	GGNCC	2 cut(s)	670, 695
AsuII	TTCGAA	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	670, 695
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BalI	TGGCCA	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	3 cut(s)	83, 301, 355
BciT130I	CCWGG	1 cut(s)	172
BciVI	GTATCC	1 cut(s)	437
BcoDI	GTCTC	2 cut(s)	322, 444
BfaI	CTAG	2 cut(s)	504, 576
BfuAI	ACCTGC	1 cut(s)	706
BfuI	GTATCC	1 cut(s)	437
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	2 cut(s)	670, 695
BmgT120I	GGNCC	2 cut(s)	670, 695
BmiI	GGNNCC	2 cut(s)	282, 388
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	31
BmtI	GCTAGC	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	171, 196, 567
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 360, 390
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	171, 196, 567
BseGI	GGATG	2 cut(s)	280, 735
BseJI	GATNNNNATC	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	450, 690
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	734
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	311, 440
BsiEI	CGRYCG	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	441, 727
BsmAI	GTCTC	2 cut(s)	322, 444
BsmBI	CGTCTC	2 cut(s)	322, 444
BsnI	GGCC	2 cut(s)	311, 440
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	3 cut(s)	234, 280, 578
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	2 cut(s)	311, 440
BspCNI	CTCAG	2 cut(s)	451, 691
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	282, 388
BspMI	ACCTGC	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	275, 288
BspT104I	TTCGAA	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	171, 196, 567
BssMI	GATC	3 cut(s)	234, 280, 578
BssT1I	CCWWGG	2 cut(s)	196, 567
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	376, 419
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	122, 505
BstDEI	CTNAG	2 cut(s)	459, 699
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	280, 735
BstHHI	GCGC	2 cut(s)	266, 509
BstKTI	GATC	3 cut(s)	237, 283, 581
BstMAI	GTCTC	2 cut(s)	322, 444
BstMBI	GATC	3 cut(s)	234, 280, 578
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 521
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	311, 440
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	280, 735
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	122, 505
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	2 cut(s)	266, 509
Cfr13I	GGNCC	2 cut(s)	670, 695
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	3 cut(s)	568, 659, 689
DdeI	CTNAG	2 cut(s)	459, 699
DpnI	GATC	3 cut(s)	236, 282, 580
DpnII	GATC	3 cut(s)	234, 280, 578
EaeI	YGGCCR	2 cut(s)	309, 438
Eco130I	CCWWGG	2 cut(s)	196, 567
Eco24I	GRGCYC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	670, 695
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	735
EcoT14I	CCWWGG	2 cut(s)	196, 567
EcoT38I	GRGCYC	1 cut(s)	389
ErhI	CCWWGG	2 cut(s)	196, 567
Esp3I	CGTCTC	2 cut(s)	322, 444
FaeI	CATG	3 cut(s)	571, 662, 692
FatI	CATG	3 cut(s)	567, 658, 688
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	2 cut(s)	504, 576
GlaI	GCGC	2 cut(s)	265, 508
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	311, 440
HapII	CCGG	2 cut(s)	441, 727
HhaI	GCGC	2 cut(s)	266, 509
Hin1II	CATG	3 cut(s)	571, 662, 692
Hin6I	GCGC	2 cut(s)	264, 507
HinP1I	GCGC	2 cut(s)	264, 507
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	4 cut(s)	149, 542, 554, 613
HpaII	CCGG	2 cut(s)	441, 727
Hpy188I	TCNGA	5 cut(s)	226, 234, 391, 620, 743
Hpy188III	TCNNGA	2 cut(s)	432, 689
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	294, 334, 359
HpyCH4III	ACNGT	2 cut(s)	376, 419
HpyCH4IV	ACGT	3 cut(s)	140, 315, 453
HpyCH4V	TGCA	1 cut(s)	715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 521
HpyF3I	CTNAG	2 cut(s)	459, 699
HpySE526I	ACGT	3 cut(s)	140, 315, 453
Hsp92II	CATG	3 cut(s)	571, 662, 692
HspAI	GCGC	2 cut(s)	264, 507
Kzo9I	GATC	3 cut(s)	234, 280, 578
LmnI	GCTCC	2 cut(s)	107, 392
LpnPI	CCDG	8 cut(s)	157, 184, 257, 454, 618, 701, 711, 740
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	504, 576
MaeII	ACGT	3 cut(s)	140, 315, 453
MalI	GATC	3 cut(s)	236, 282, 580
MboI	GATC	3 cut(s)	234, 280, 578
MboII	GAAGA	5 cut(s)	50, 229, 619, 622, 671
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	389
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	4 cut(s)	177, 207, 302, 517
MluNI	TGGCCA	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	4 cut(s)	454, 565, 606, 683
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	2 cut(s)	441, 727
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	107, 521
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	3 cut(s)	234, 280, 578
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	3 cut(s)	571, 662, 692
NlaIV	GGNNCC	2 cut(s)	282, 388
NspV	TTCGAA	1 cut(s)	152
PagI	TCATGA	1 cut(s)	688
PaqCI	CACCTGC	1 cut(s)	706
PfeI	GAWTC	4 cut(s)	149, 542, 554, 613
PkrI	GCNGC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	282, 388
PspPI	GGNCC	2 cut(s)	670, 695
PspPPI	RGGWCCY	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	3 cut(s)	234, 280, 578
Sau96I	GGNCC	2 cut(s)	670, 695
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	2 cut(s)	670, 695
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	4 cut(s)	177, 207, 302, 517
SsiI	CCGC	1 cut(s)	478
SspMI	CTAG	2 cut(s)	504, 576
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	2 cut(s)	196, 567
TaaI	ACNGT	2 cut(s)	376, 419
TaiI	ACGT	3 cut(s)	143, 318, 456
TaqI	TCGA	5 cut(s)	152, 414, 431, 591, 682
TasI	AATT	4 cut(s)	177, 207, 302, 517
TfiI	GAWTC	4 cut(s)	149, 542, 554, 613
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	5 cut(s)	200, 276, 525, 638, 677
TspGWI	ACGGA	2 cut(s)	408, 708
VpaK11BI	GGWCC	2 cut(s)	670, 695
XapI	RAATTY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XspI	CTAG	2 cut(s)	504, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.