Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3503503 .. 3505702

Gene Structure 2200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAATGAGCTGGAGCAACATCTCATTCATGCATCTCAGCAGGCCGAGTCACTCGTTAAAGCTCAACAGGACATGGGAGAGACGATGGGAGAGTTAGGACTAGCGTTTATTAAGCTGACCAAGTTTGAGAACGAGGAGGCCTTGTTCAACTCTCAGAGAGTGCGGGCTGCCGACATGAAGAATGTGGCAACTGCTGCAGTCAAAGCCAGCAGATTCTATCGGGAGTTAAATGCTCAAACCGTCAAGCATTTCGATACATTTCATGAATATCTTGGGCTAATGTTAGCTGTCAACGGTGCATTCTCGGATAGGTCAAGTGCTCTATTGACAGTGCAGACTCTTCTATCAGAACTGGGTTCACTGCAATCACGGGCTGAAAAACTTGAAGTTCAATCCAATAAAATTTTTGGTGGTGACAAATCAAGGAATCGAAAACTAGAAGAGTTAAATGAAACCATAAGAACCACCGAGGATGCTAAAAATGTAGCAATCAGAGAATATGAGCGGATCAAGGAAAATAACAGGAGTGAACTTGAAAGACTTGACAACGAGAGGCATGCTGACTTCTTAAACATGTTGAAGGGATTTGTGCATAATCAGGTAGGATACGCTGAAAAGATAGCAAATGTGTGGTCGACTGTTGCAGAGGAGACCCGTTCGTATGCAAAAGAGAGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

227

Amino Acids

25.73

Weight (kDa)

5.78

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps5	PF09325	2 - 216	9.9e-17	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	635
AciI	CCGC	2 cut(s)	163, 505
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	402
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	5 cut(s)	148, 386, 392, 536, 580
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	4 cut(s)	10, 62, 115, 287
AluI	AGCT	4 cut(s)	10, 62, 115, 287
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	74, 644
AlwI	GGATC	1 cut(s)	515
AoxI	GGCC	2 cut(s)	42, 138
ApeKI	GCWGC	2 cut(s)	167, 194
ApoI	RAATTY	1 cut(s)	402
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AsuHPI	GGTGA	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	154, 181
BccI	CCATC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciVI	GTATCC	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	74, 644
BfaI	CTAG	2 cut(s)	101, 437
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	599
BisI	GCNGC	2 cut(s)	168, 195
BlsI	GCNGC	2 cut(s)	169, 196
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	41, 463
BmuI	ACTGGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse1I	ACTGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	50, 167
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	149, 662
BseXI	GCAGC	2 cut(s)	154, 181
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	44, 140
BsiHKAI	GWGCWC	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	74, 644
BsmBI	CGTCTC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	44, 140
Bso31I	GGTCTC	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	507
BspACI	CCGC	2 cut(s)	163, 505
BspANI	GGCC	2 cut(s)	44, 140
BspCNI	CTCAG	2 cut(s)	49, 166
BspHI	TCATGA	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	1 cut(s)	507
Bst4CI	ACNGT	4 cut(s)	241, 296, 331, 640
Bst6I	CTCTTC	2 cut(s)	345, 435
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	4 cut(s)	42, 165, 208, 558
BstDEI	CTNAG	2 cut(s)	36, 153
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	1 cut(s)	510
BstMAI	GTCTC	2 cut(s)	74, 644
BstMBI	GATC	1 cut(s)	507
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 203
BstNSI	RCATGY	2 cut(s)	560, 577
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	154, 181
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	44, 140
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	336, 359
Cac8I	GCNNGC	4 cut(s)	42, 165, 208, 558
CciI	TCATGA	1 cut(s)	262
CviAII	CATG	6 cut(s)	29, 73, 175, 263, 557, 574
DdeI	CTNAG	2 cut(s)	36, 153
DpnI	GATC	1 cut(s)	509
DpnII	GATC	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	345, 435
EarI	CTCTTC	2 cut(s)	345, 435
Eco147I	AGGCCT	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	644
EcoT22I	ATGCAT	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	6 cut(s)	32, 76, 178, 266, 560, 577
FalI	AAGNNNNNCTT	1 cut(s)	660
FatI	CATG	6 cut(s)	28, 72, 174, 262, 556, 573
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	635
Fnu4HI	GCNGC	2 cut(s)	168, 195
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	168, 195
FspBI	CTAG	2 cut(s)	101, 437
GluI	GCNGC	2 cut(s)	168, 195
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	44, 140
Hin1II	CATG	6 cut(s)	32, 76, 178, 266, 560, 577
HincII	GTYRAC	2 cut(s)	292, 636
HindII	GTYRAC	2 cut(s)	292, 636
HinfI	GANTC	4 cut(s)	47, 213, 337, 427
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	4 cut(s)	292, 359, 530, 636
Hpy188I	TCNGA	4 cut(s)	156, 307, 349, 494
Hpy188III	TCNNGA	2 cut(s)	221, 263
Hpy8I	GTNNAC	4 cut(s)	292, 359, 530, 636
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	4 cut(s)	241, 296, 331, 640
HpyCH4V	TGCA	8 cut(s)	32, 197, 299, 334, 364, 592, 644, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 203
HpyF3I	CTNAG	2 cut(s)	36, 153
Hsp92II	CATG	6 cut(s)	32, 76, 178, 266, 560, 577
Kzo9I	GATC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	26, 53, 220, 338, 508, 584
Lsp1109I	GCAGC	2 cut(s)	154, 181
LweI	GCATC	2 cut(s)	41, 463
MaeI	CTAG	2 cut(s)	101, 437
MaeIII	GTNAC	2 cut(s)	48, 413
MalI	GATC	1 cut(s)	509
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	1 cut(s)	507
MboII	GAAGA	3 cut(s)	190, 332, 452
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	1 cut(s)	402
MlyI	GAGTC	2 cut(s)	56, 331
MnlI	CCTC	5 cut(s)	127, 130, 463, 546, 640
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	5 cut(s)	57, 111, 227, 446, 569
Mva1269I	GAATGC	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	194, 203
NdeII	GATC	1 cut(s)	507
NlaIII	CATG	6 cut(s)	32, 76, 178, 266, 560, 577
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	48, 413
NsiI	ATGCAT	1 cut(s)	34
NspI	RCATGY	2 cut(s)	560, 577
PaeI	GCATGC	1 cut(s)	560
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	140
PciI	ACATGT	1 cut(s)	573
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	213, 427
PkrI	GCNGC	2 cut(s)	169, 196
PleI	GAGTC	2 cut(s)	55, 331
PpsI	GAGTC	2 cut(s)	55, 331
PscI	ACATGT	1 cut(s)	573
PstI	CTGCAG	1 cut(s)	199
SalI	GTCGAC	1 cut(s)	634
SaqAI	TTAA	5 cut(s)	57, 111, 227, 446, 569
SatI	GCNGC	2 cut(s)	168, 195
Sau3AI	GATC	1 cut(s)	507
SchI	GAGTC	2 cut(s)	56, 331
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	6 cut(s)	12, 64, 117, 289, 314, 603
SfaNI	GCATC	2 cut(s)	41, 463
SfcI	CTRYAG	1 cut(s)	195
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	1 cut(s)	402
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	163, 505
SspMI	CTAG	2 cut(s)	101, 437
StuI	AGGCCT	1 cut(s)	140
TaaI	ACNGT	4 cut(s)	241, 296, 331, 640
TaqI	TCGA	3 cut(s)	252, 430, 635
TasI	AATT	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	213, 427
Tru1I	TTAA	5 cut(s)	57, 111, 227, 446, 569
Tru9I	TTAA	5 cut(s)	57, 111, 227, 446, 569
TscAI	CASTG	2 cut(s)	336, 366
TseFI	GTSAC	2 cut(s)	48, 413
TseI	GCWGC	2 cut(s)	167, 194
Tsp45I	GTSAC	2 cut(s)	48, 413
TspDTI	ATGAA	6 cut(s)	17, 17, 191, 251, 279, 465
TspRI	CASTG	2 cut(s)	336, 366
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	2 cut(s)	560, 577
XmiI	GTMKAC	1 cut(s)	635
XspI	CTAG	2 cut(s)	101, 437
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.