pycom03g04890

Belongs to the eukaryotic ribosomal protein eS4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
3812830 .. 3814086
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGCAGCGCCATGTTTTGGTTGGCGGAAAGGTCAGGATCGACAAGACTTACCCTTCTGTCTTTATGGATGTTGTTTTGATCCCGAAAACAAATGAAAATTTCCGTATGCTCTTTGACACCAAGGGTCGGTTTAGAATGTTGTACATCATTTTCAAGCTCTGCAAGGTTCGATCAGTGCAGTTTGGGAAGAAGGGCATCCCCTATCTTAACACTTTTGATGGACGCACTATTCGCTACCCTGACCCCCTCATCAAGGCCAATGACACTATCAAGCTGGACTTAGAGACCTACAAAATCACTGACTTCATTAAGTTTGATGTTGGTAATGTTGTCATGGTTACTGGCGGAAGGAATAGGGGACGTGTTGGAGTAATTAAGAACAGGGAGAAGCATGAGGGAAGCTTTGAAACTATCCACGTGCCCTCGGGTACAAAGCCGTGGGTGTCGCTTCCCAAGGACAAGGGTATCAAGCTAAGCATCATTGAAGAGGCAAAGAAGCGACGAGCAGCCACCCAAACAGCTGCTACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
40S_S4_C KOW RS4NT Ribosomal_S4e S4

Protein Analysis

178

Amino Acids

20.19

Weight (kDa)

10.17

Isoelectric Point (pI)

12.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S4e PF00900 30 - 99 4.4e-26 Ribosomal family S4e
KOW PF00467 107 - 139 4.1e-06 KOW motif
40S_S4_C PF16121 143 - 170 2.9e-11 40S ribosomal protein S4 C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AciI CCGC 2 cut(s) 24, 345
AclWI GGATC 2 cut(s) 44, 73
AcsI RAATTY 1 cut(s) 97
AcvI CACGTG 1 cut(s) 418
AfaI GTAC 2 cut(s) 143, 430
AfiI CCNNNNNNNGG 3 cut(s) 16, 126, 253
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 3 cut(s) 154, 407, 485
AjiI CACGTC 1 cut(s) 362
AluBI AGCT 5 cut(s) 157, 274, 402, 472, 521
AluI AGCT 5 cut(s) 157, 274, 402, 472, 521
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 44, 73
Ama87I CYCGRG 1 cut(s) 424
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 4, 506, 521
ApoI RAATTY 1 cut(s) 97
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 1 cut(s) 9
AvaI CYCGRG 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 423
BaeI ACNNNNGTAYC 2 cut(s) 448, 481
BbrPI CACGTG 1 cut(s) 418
BbvI GCAGC 3 cut(s) 16, 508, 518
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 10
BisI GCNGC 3 cut(s) 5, 507, 522
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 3 cut(s) 6, 508, 523
BmeT110I CYCGRG 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 362
BmsI GCATC 2 cut(s) 204, 486
Bpu1102I GCTNAGC 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 4 cut(s) 120, 423, 437, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 126, 253
Bse1I ACTGG 1 cut(s) 346
BseDI CCNNGG 4 cut(s) 120, 423, 437, 453
BseGI GGATG 2 cut(s) 73, 195
BseLI CCNNNNNNNGG 3 cut(s) 16, 126, 253
BseNI ACTGG 1 cut(s) 346
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 3 cut(s) 16, 508, 518
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 424
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 3 cut(s) 16, 126, 253
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 423
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 3 cut(s) 36, 78, 170
Bsp1720I GCTNAGC 1 cut(s) 473
BspACI CCGC 2 cut(s) 24, 345
BspANI GGCC 1 cut(s) 257
BspPI GGATC 2 cut(s) 44, 73
BspTNI GGTCTC 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 4 cut(s) 120, 423, 437, 453
BssMI GATC 3 cut(s) 36, 78, 170
BssT1I CCWWGG 2 cut(s) 120, 453
Bst6I CTCTTC 1 cut(s) 480
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 280, 473
BstDSI CCRYGG 1 cut(s) 437
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 73, 195
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 39, 81, 173
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 3 cut(s) 36, 78, 170
BstMWI GCNNNNNNNGC 2 cut(s) 231, 527
BstSLI GKGCMC 1 cut(s) 423
BstV1I GCAGC 3 cut(s) 16, 508, 518
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 73, 195
BtsIMutI CAGTG 2 cut(s) 180, 297
CfoI GCGC 1 cut(s) 9
CseI GACGC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 142, 429
CviAII CATG 3 cut(s) 11, 334, 392
CviJI RGCY 8 cut(s) 157, 257, 274, 402, 436, 472, 509, 521
CviKI_1 RGCY 8 cut(s) 157, 257, 274, 402, 436, 472, 509, 521
CviQI GTAC 2 cut(s) 142, 429
DdeI CTNAG 2 cut(s) 280, 473
DpnI GATC 3 cut(s) 38, 80, 172
DpnII GATC 3 cut(s) 36, 78, 170
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
EciI GGCGGA 2 cut(s) 39, 360
Eco130I CCWWGG 2 cut(s) 120, 453
Eco31I GGTCTC 1 cut(s) 278
Eco72I CACGTG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 120, 453
ErhI CCWWGG 2 cut(s) 120, 453
FaeI CATG 3 cut(s) 14, 337, 395
FaiI YATR 6 cut(s) 12, 65, 107, 335, 393, 532
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 372
FatI CATG 3 cut(s) 10, 333, 391
Fnu4HI GCNGC 3 cut(s) 5, 507, 522
FokI GGATG 2 cut(s) 80, 182
Fsp4HI GCNGC 3 cut(s) 5, 507, 522
GlaI GCGC 1 cut(s) 8
GluI GCNGC 3 cut(s) 5, 507, 522
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 1 cut(s) 257
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 9
Hin1II CATG 3 cut(s) 14, 337, 395
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 34, 82
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 3 cut(s) 63, 184, 342
HpyCH4IV ACGT 2 cut(s) 361, 417
HpyCH4V TGCA 4 cut(s) 4, 162, 178, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 527
HpyF3I CTNAG 2 cut(s) 280, 473
HpySE526I ACGT 2 cut(s) 361, 417
Hsp92II CATG 3 cut(s) 14, 337, 395
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 36, 78, 170
LpnPI CCDG 5 cut(s) 19, 252, 260, 327, 367
Lsp1109I GCAGC 3 cut(s) 16, 508, 518
LweI GCATC 2 cut(s) 204, 486
MaeII ACGT 2 cut(s) 361, 417
MaeIII GTNAC 1 cut(s) 337
MalI GATC 3 cut(s) 38, 80, 172
MboI GATC 3 cut(s) 36, 78, 170
MboII GAAGA 2 cut(s) 199, 497
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 2 cut(s) 97, 372
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 4 cut(s) 257, 388, 433, 481
MseI TTAA 3 cut(s) 207, 309, 375
MspA1I CMGCKG 1 cut(s) 521
MwoI GCNNNNNNNGC 2 cut(s) 231, 527
NdeII GATC 3 cut(s) 36, 78, 170
NlaIII CATG 3 cut(s) 14, 337, 395
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 3 cut(s) 6, 508, 523
PmaCI CACGTG 1 cut(s) 418
PmlI CACGTG 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 418
PspCI CACGTG 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 2 cut(s) 143, 430
RsaNI GTAC 2 cut(s) 142, 429
SaqAI TTAA 3 cut(s) 207, 309, 375
SatI GCNGC 3 cut(s) 5, 507, 522
Sau3AI GATC 3 cut(s) 36, 78, 170
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 2 cut(s) 204, 486
Sse9I AATT 2 cut(s) 97, 372
SsiI CCGC 2 cut(s) 24, 345
StyI CCWWGG 2 cut(s) 120, 453
TaiI ACGT 2 cut(s) 364, 420
TaqI TCGA 2 cut(s) 39, 169
TasI AATT 2 cut(s) 97, 372
TatI WGTACW 1 cut(s) 141
Tru1I TTAA 3 cut(s) 207, 309, 375
Tru9I TTAA 3 cut(s) 207, 309, 375
TscAI CASTG 2 cut(s) 180, 304
TseI GCWGC 3 cut(s) 4, 506, 521
TspDTI ATGAA 2 cut(s) 108, 295
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 2 cut(s) 180, 304
Van91I CCANNNNNTGG 1 cut(s) 16
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.