Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3870258 .. 3873016

Gene Structure 2759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACATGTGGGAACAAGAACATTCTGCAATTTTATGGTGTTTGCATCGATGACAATCATGGGTTGTGCGTTGTTACGAAGCTGATGGAAGGTGGATCAGTATATGACTTGATGCTTCAGAAAAAGAAGCTTCAGACTAAGGACATATTAAGGATTGCTGTTGATGTAGCAGAGGGAGTCAAGTTCATGAATGACCACGGCGTTGCATATAGAGACCTCAACACACAGCGAATATTATTGGATCGACATGGGAATGCTTCCTTAGGTGACATGGGTATAGTTGCTGCTTGCCAAAGTGTTGGTGACGCAATGGAGTATGAGACTGATGGATACCGGTGGCTAGCTCCCGAGATCATCGCTGGTGATCCAGAGTGCGTAAGCGAGACATGGATGAGTAATGTGTACAGTTTCGGGATGGTAATTTGGGAGATGGTCACTGGTGAGGCAGCATATGCCGCATGTTCACCGGTCCAAGCAGCAGTCGGGATCGCTGCCTGTGGCCTCAGACCCGAGATTCCGAAGGACTGCCCACAAATTCTGAAGTCCTTGATGACCAAGTGCTGGAACAATTCACCGTCAAACCGCCCTCAGTTCTCGGAAATCCTATCAACTTTGCTGCAATCAAGCAACAGTAATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

214

Amino Acids

23.38

Weight (kDa)

5.06

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 203	7.3e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 205	6.8e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	561
AciI	CCGC	2 cut(s)	456, 583
AclWI	GGATC	4 cut(s)	103, 249, 359, 494
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	3 cut(s)	101, 116, 560
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	1 cut(s)	5
AgeI	ACCGGT	2 cut(s)	333, 466
AluBI	AGCT	3 cut(s)	82, 130, 344
AluI	AGCT	3 cut(s)	82, 130, 344
Alw26I	GTCTC	3 cut(s)	207, 314, 377
AlwI	GGATC	4 cut(s)	103, 249, 359, 494
Ama87I	CYCGRG	2 cut(s)	347, 509
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	5 cut(s)	284, 446, 476, 491, 616
ApoI	RAATTY	1 cut(s)	534
AsiGI	ACCGGT	2 cut(s)	333, 466
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	6 cut(s)	278, 314, 374, 452, 456, 564
AsuNHI	GCTAGC	1 cut(s)	340
AvaI	CYCGRG	2 cut(s)	347, 509
AvaII	GGWCC	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	262
BbvI	GCAGC	5 cut(s)	271, 458, 478, 488, 603
BccI	CCATC	4 cut(s)	79, 320, 409, 424
BceAI	ACGGC	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	207, 314, 377
BfaI	CTAG	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	6 cut(s)	285, 447, 456, 477, 492, 617
BlsI	GCNGC	6 cut(s)	286, 448, 457, 478, 493, 618
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	2 cut(s)	347, 509
BmgT120I	GGNCC	1 cut(s)	469
BmsI	GCATC	2 cut(s)	54, 102
BmtI	GCTAGC	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	2 cut(s)	333, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse118I	RCCGGY	2 cut(s)	333, 466
Bse1I	ACTGG	1 cut(s)	442
Bse21I	CCTNAGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	396, 420
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	517, 602
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	5 cut(s)	271, 458, 478, 488, 603
BshFI	GGCC	1 cut(s)	501
BshTI	ACCGGT	2 cut(s)	333, 466
BshVI	ATCGAT	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	347, 509
BsiSI	CCGG	2 cut(s)	334, 467
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	3 cut(s)	207, 314, 377
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	501
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	2 cut(s)	347, 509
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	5 cut(s)	95, 241, 351, 364, 486
BspACI	CCGC	2 cut(s)	456, 583
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	2 cut(s)	516, 601
BspDI	ATCGAT	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	186
BspOI	GCTAGC	1 cut(s)	344
BspPI	GGATC	4 cut(s)	103, 249, 359, 494
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	2 cut(s)	333, 466
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	442
BssAI	RCCGGY	2 cut(s)	333, 466
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	5 cut(s)	95, 241, 351, 364, 486
Bst4CI	ACNGT	3 cut(s)	407, 576, 632
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	289, 342
BstDEI	CTNAG	4 cut(s)	138, 262, 503, 588
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	396, 420
BstKTI	GATC	5 cut(s)	98, 244, 354, 367, 489
BstMAI	GTCTC	3 cut(s)	207, 314, 377
BstMBI	GATC	5 cut(s)	95, 241, 351, 364, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 455
BstNSI	RCATGY	2 cut(s)	9, 462
BstV1I	GCAGC	5 cut(s)	271, 458, 478, 488, 603
BstXI	CCANNNNNNTGG	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	396, 420
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	2 cut(s)	289, 342
CciI	TCATGA	1 cut(s)	186
Cfr10I	RCCGGY	2 cut(s)	333, 466
Cfr13I	GGNCC	1 cut(s)	469
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	403
CspAI	ACCGGT	2 cut(s)	333, 466
CviAII	CATG	7 cut(s)	6, 59, 187, 248, 271, 387, 459
CviJI	RGCY	5 cut(s)	82, 130, 340, 344, 501
CviKI_1	RGCY	5 cut(s)	82, 130, 340, 344, 501
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	4 cut(s)	138, 262, 503, 588
DpnI	GATC	5 cut(s)	97, 243, 353, 366, 488
DpnII	GATC	5 cut(s)	95, 241, 351, 364, 486
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	469
Eco57I	CTGAAG	3 cut(s)	101, 116, 560
Eco81I	CCTNAGG	1 cut(s)	262
Eco88I	CYCGRG	2 cut(s)	347, 509
FaeI	CATG	7 cut(s)	9, 62, 190, 251, 274, 390, 462
FatI	CATG	7 cut(s)	5, 58, 186, 247, 270, 386, 458
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	6 cut(s)	285, 447, 456, 477, 492, 617
FokI	GGATG	2 cut(s)	403, 427
Fsp4HI	GCNGC	6 cut(s)	285, 447, 456, 477, 492, 617
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	6 cut(s)	285, 447, 456, 477, 492, 617
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	2 cut(s)	334, 467
HgaI	GACGC	1 cut(s)	314
Hin1II	CATG	7 cut(s)	9, 62, 190, 251, 274, 390, 462
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	177, 514
HpaII	CCGG	2 cut(s)	334, 467
HphI	GGTGA	6 cut(s)	278, 314, 374, 452, 456, 564
Hpy166II	GTNNAC	2 cut(s)	403, 464
Hpy188I	TCNGA	6 cut(s)	120, 135, 506, 519, 540, 598
Hpy188III	TCNNGA	5 cut(s)	187, 347, 368, 412, 484
Hpy8I	GTNNAC	2 cut(s)	403, 464
HpyAV	CCTTC	2 cut(s)	83, 514
HpyCH4III	ACNGT	3 cut(s)	407, 576, 632
HpyCH4V	TGCA	4 cut(s)	28, 45, 206, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 455
HpyF3I	CTNAG	4 cut(s)	138, 262, 503, 588
Hsp92II	CATG	7 cut(s)	9, 62, 190, 251, 274, 390, 462
Kzo9I	GATC	5 cut(s)	95, 241, 351, 364, 486
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	7 cut(s)	345, 347, 381, 423, 480, 508, 547
Lsp1109I	GCAGC	5 cut(s)	271, 458, 478, 488, 603
LweI	GCATC	2 cut(s)	54, 102
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	4 cut(s)	73, 266, 302, 433
MalI	GATC	5 cut(s)	97, 243, 353, 366, 488
MboI	GATC	5 cut(s)	95, 241, 351, 364, 486
MluCI	AATT	4 cut(s)	29, 420, 534, 568
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	166, 227, 436, 512, 597
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	2 cut(s)	334, 467
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	452, 455
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	5 cut(s)	95, 241, 351, 364, 486
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	7 cut(s)	9, 62, 190, 251, 274, 390, 462
NmuCI	GTSAC	3 cut(s)	266, 302, 433
NspI	RCATGY	2 cut(s)	9, 462
PagI	TCATGA	1 cut(s)	186
PciI	ACATGT	1 cut(s)	5
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	561
PinAI	ACCGGT	2 cut(s)	333, 466
PkrI	GCNGC	6 cut(s)	286, 448, 457, 478, 493, 618
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	5
PspPI	GGNCC	1 cut(s)	469
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	6 cut(s)	285, 447, 456, 477, 492, 617
Sau3AI	GATC	5 cut(s)	95, 241, 351, 364, 486
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	186
SetI	ASST	7 cut(s)	84, 94, 132, 219, 268, 346, 641
SfaNI	GCATC	2 cut(s)	54, 102
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	4 cut(s)	29, 420, 534, 568
SsiI	CCGC	2 cut(s)	456, 583
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	1 cut(s)	341
TaaI	ACNGT	3 cut(s)	407, 576, 632
TaqI	TCGA	2 cut(s)	48, 244
TasI	AATT	4 cut(s)	29, 420, 534, 568
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	3 cut(s)	266, 302, 433
TseI	GCWGC	5 cut(s)	284, 446, 476, 491, 616
Tsp45I	GTSAC	3 cut(s)	266, 302, 433
TspDTI	ATGAA	2 cut(s)	175, 203
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	2 cut(s)	9, 462
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.