gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 230 |
| AciI | CCGC | 1 cut(s) | 20 |
| AcsI | RAATTY | 2 cut(s) | 48, 113 |
| AfaI | GTAC | 2 cut(s) | 353, 379 |
| AflII | CTTAAG | 1 cut(s) | 29 |
| AgsI | TTSAA | 5 cut(s) | 111, 164, 181, 196, 459 |
| ApoI | RAATTY | 2 cut(s) | 48, 113 |
| AseI | ATTAAT | 1 cut(s) | 216 |
| AspLEI | GCGC | 1 cut(s) | 347 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| AxyI | CCTNAGG | 1 cut(s) | 255 |
| BanI | GGYRCC | 1 cut(s) | 230 |
| BbsI | GAAGAC | 1 cut(s) | 137 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 281, 315 |
| BfaI | CTAG | 2 cut(s) | 426, 450 |
| BfrI | CTTAAG | 1 cut(s) | 29 |
| BisI | GCNGC | 1 cut(s) | 21 |
| BlsI | GCNGC | 1 cut(s) | 22 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmiI | GGNNCC | 3 cut(s) | 24, 232, 423 |
| BmsI | GCATC | 1 cut(s) | 289 |
| BpiI | GAAGAC | 1 cut(s) | 137 |
| BpuEI | CTTGAG | 2 cut(s) | 115, 206 |
| Bse21I | CCTNAGG | 1 cut(s) | 255 |
| Bse3DI | GCAATG | 1 cut(s) | 15 |
| BseGI | GGATG | 1 cut(s) | 304 |
| BseMI | GCAATG | 1 cut(s) | 15 |
| BseMII | CTCAG | 1 cut(s) | 45 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BshNI | GGYRCC | 1 cut(s) | 230 |
| BslFI | GGGAC | 1 cut(s) | 339 |
| BsmFI | GGGAC | 1 cut(s) | 339 |
| BspACI | CCGC | 1 cut(s) | 20 |
| BspCNI | CTCAG | 1 cut(s) | 46 |
| BspLI | GGNNCC | 3 cut(s) | 24, 232, 423 |
| BspT107I | GGYRCC | 1 cut(s) | 230 |
| BspTI | CTTAAG | 1 cut(s) | 29 |
| BsrDI | GCAATG | 1 cut(s) | 15 |
| Bst6I | CTCTTC | 1 cut(s) | 165 |
| BstAFI | CTTAAG | 1 cut(s) | 29 |
| BstC8I | GCNNGC | 1 cut(s) | 304 |
| BstDEI | CTNAG | 2 cut(s) | 54, 255 |
| BstF5I | GGATG | 1 cut(s) | 304 |
| BstHHI | GCGC | 1 cut(s) | 347 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 312 |
| BstNSI | RCATGY | 1 cut(s) | 306 |
| BstV2I | GAAGAC | 1 cut(s) | 137 |
| Bsu36I | CCTNAGG | 1 cut(s) | 255 |
| BtsCI | GGATG | 1 cut(s) | 304 |
| Cac8I | GCNNGC | 1 cut(s) | 304 |
| CfoI | GCGC | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| Csp6I | GTAC | 2 cut(s) | 352, 378 |
| CviAII | CATG | 4 cut(s) | 224, 303, 329, 435 |
| CviJI | RGCY | 3 cut(s) | 23, 364, 422 |
| CviKI_1 | RGCY | 3 cut(s) | 23, 364, 422 |
| CviQI | GTAC | 2 cut(s) | 352, 378 |
| DdeI | CTNAG | 2 cut(s) | 54, 255 |
| Eam1104I | CTCTTC | 1 cut(s) | 165 |
| EarI | CTCTTC | 1 cut(s) | 165 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| Eco81I | CCTNAGG | 1 cut(s) | 255 |
| EcoT22I | ATGCAT | 1 cut(s) | 304 |
| FaeI | CATG | 4 cut(s) | 227, 306, 332, 438 |
| FaiI | YATR | 9 cut(s) | 101, 122, 131, 225, 304, 330, 393, 402, 436 |
| FaqI | GGGAC | 1 cut(s) | 339 |
| FatI | CATG | 4 cut(s) | 223, 302, 328, 434 |
| Fnu4HI | GCNGC | 1 cut(s) | 21 |
| FokI | GGATG | 1 cut(s) | 311 |
| Fsp4HI | GCNGC | 1 cut(s) | 21 |
| FspBI | CTAG | 2 cut(s) | 426, 450 |
| GlaI | GCGC | 1 cut(s) | 346 |
| GluI | GCNGC | 1 cut(s) | 21 |
| HhaI | GCGC | 1 cut(s) | 347 |
| Hin1II | CATG | 4 cut(s) | 227, 306, 332, 438 |
| Hin6I | GCGC | 1 cut(s) | 345 |
| HinP1I | GCGC | 1 cut(s) | 345 |
| HinfI | GANTC | 2 cut(s) | 56, 446 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 2 cut(s) | 94, 164 |
| HpyAV | CCTTC | 3 cut(s) | 221, 316, 331 |
| HpyCH4V | TGCA | 2 cut(s) | 302, 315 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 312 |
| HpyF3I | CTNAG | 2 cut(s) | 54, 255 |
| Hsp92II | CATG | 4 cut(s) | 227, 306, 332, 438 |
| HspAI | GCGC | 1 cut(s) | 345 |
| LmnI | GCTCC | 2 cut(s) | 28, 427 |
| LpnPI | CCDG | 1 cut(s) | 350 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 426, 450 |
| MaeIII | GTNAC | 1 cut(s) | 57 |
| MboII | GAAGA | 4 cut(s) | 137, 182, 301, 346 |
| MluCI | AATT | 8 cut(s) | 6, 48, 70, 82, 113, 191, 213, 459 |
| MlyI | GAGTC | 2 cut(s) | 65, 440 |
| MnlI | CCTC | 3 cut(s) | 101, 160, 412 |
| Mph1103I | ATGCAT | 1 cut(s) | 304 |
| MseI | TTAA | 2 cut(s) | 30, 216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 228 |
| MspCI | CTTAAG | 1 cut(s) | 29 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 312 |
| NlaIII | CATG | 4 cut(s) | 227, 306, 332, 438 |
| NlaIV | GGNNCC | 3 cut(s) | 24, 232, 423 |
| NmeAIII | GCCGAG | 1 cut(s) | 259 |
| NmuCI | GTSAC | 1 cut(s) | 57 |
| NsiI | ATGCAT | 1 cut(s) | 304 |
| NspI | RCATGY | 1 cut(s) | 306 |
| PaeI | GCATGC | 1 cut(s) | 306 |
| PkrI | GCNGC | 1 cut(s) | 22 |
| PleI | GAGTC | 2 cut(s) | 64, 440 |
| PpsI | GAGTC | 2 cut(s) | 64, 440 |
| PshBI | ATTAAT | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 3 cut(s) | 24, 232, 423 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| RsaI | GTAC | 2 cut(s) | 353, 379 |
| RsaNI | GTAC | 2 cut(s) | 352, 378 |
| RseI | CAYNNNNRTG | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 30, 216 |
| SatI | GCNGC | 1 cut(s) | 21 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| SchI | GAGTC | 2 cut(s) | 65, 440 |
| SetI | ASST | 3 cut(s) | 232, 261, 379 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SinI | GGWCC | 1 cut(s) | 103 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 228 |
| SmlI | CTYRAG | 3 cut(s) | 29, 94, 185 |
| SmoI | CTYRAG | 3 cut(s) | 29, 94, 185 |
| SphI | GCATGC | 1 cut(s) | 306 |
| Sse9I | AATT | 8 cut(s) | 6, 48, 70, 82, 113, 191, 213, 459 |
| SsiI | CCGC | 1 cut(s) | 20 |
| SspMI | CTAG | 2 cut(s) | 426, 450 |
| TasI | AATT | 8 cut(s) | 6, 48, 70, 82, 113, 191, 213, 459 |
| TatI | WGTACW | 1 cut(s) | 351 |
| TauI | GCSGC | 1 cut(s) | 23 |
| Tru1I | TTAA | 2 cut(s) | 30, 216 |
| Tru9I | TTAA | 2 cut(s) | 30, 216 |
| TseFI | GTSAC | 1 cut(s) | 57 |
| Tsp45I | GTSAC | 1 cut(s) | 57 |
| TspDTI | ATGAA | 4 cut(s) | 64, 167, 240, 293 |
| Vha464I | CTTAAG | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| VspI | ATTAAT | 1 cut(s) | 216 |
| XapI | RAATTY | 2 cut(s) | 48, 113 |
| XceI | RCATGY | 1 cut(s) | 306 |
| XspI | CTAG | 2 cut(s) | 426, 450 |
| Zsp2I | ATGCAT | 1 cut(s) | 304 |