Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4215998 .. 4216439

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTCGGTGGTTCTATCACTTCCATCGCCGAAACGACTTTCAGTGTTCGCGCTGCACAAATCGAACGCAGTTCTCATGAAGAAAACCATGGCGTTGGAGGGTGAAAACAGTGCCAAAACCAGCAACGACCATTTGTTCTTCTGCACTCCATCCATGGTTTCCCTGGCTTCCCCATCAATCTCTTACGATTTCATGAATGAACTTCATATACGGAACTGTCACCCCAGACCAATCTCACGTCTTTACCTTGCCGGCGCTGAACAATCATCAGCATCGTCGAATCTTTGCCGAACGGGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

101

Amino Acids

10.9

Weight (kDa)

9.26

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AjiI	CACGTC	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	52, 257
AsuHPI	GGTGA	2 cut(s)	113, 212
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	3 cut(s)	31, 157, 181
BciT130I	CCWGG	1 cut(s)	164
BfaI	CTAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	87, 153, 162
Bse118I	RCCGGY	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	87, 153, 162
BseGI	GGATG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	39
BsgI	GTGCAG	2 cut(s)	38, 127
Bsh1236I	CGCG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	252
Bsp19I	CCATGG	2 cut(s)	87, 153
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	75, 192
BspLI	GGNNCC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	3 cut(s)	87, 153, 162
BssT1I	CCWWGG	2 cut(s)	87, 153
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	110, 218
BstC8I	GCNNGC	1 cut(s)	253
BstDSI	CCRYGG	2 cut(s)	87, 153
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	52, 257
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	94
BtgI	CCRYGG	2 cut(s)	87, 153
BtgZI	GCGATG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	48, 115
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	2 cut(s)	75, 192
CfoI	GCGC	2 cut(s)	52, 257
Cfr10I	RCCGGY	1 cut(s)	251
CviAII	CATG	4 cut(s)	76, 88, 154, 193
CviJI	RGCY	2 cut(s)	167, 299
CviKI_1	RGCY	2 cut(s)	167, 299
Eco130I	CCWWGG	2 cut(s)	87, 153
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	87, 153
ErhI	CCWWGG	2 cut(s)	87, 153
FaeI	CATG	4 cut(s)	79, 91, 157, 196
FaiI	YATR	6 cut(s)	77, 89, 155, 194, 207, 209
FatI	CATG	4 cut(s)	75, 87, 153, 192
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	301
GlaI	GCGC	2 cut(s)	51, 256
GluI	GCNGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	258
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	2 cut(s)	52, 257
Hin1II	CATG	4 cut(s)	79, 91, 157, 196
Hin6I	GCGC	2 cut(s)	50, 255
HinP1I	GCGC	2 cut(s)	50, 255
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	113, 212
Hpy188III	TCNNGA	2 cut(s)	76, 193
Hpy99I	CGWCG	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	110, 218
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	55, 144
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	4 cut(s)	79, 91, 157, 196
HspAI	GCGC	2 cut(s)	50, 255
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	5 cut(s)	133, 149, 176, 238, 265
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	301
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	218
MboII	GAAGA	2 cut(s)	91, 130
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	251
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	50
NaeI	GCCGGC	1 cut(s)	253
NcoI	CCATGG	2 cut(s)	87, 153
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	79, 91, 157, 196
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	218
PagI	TCATGA	2 cut(s)	75, 192
PdiI	GCCGGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
SatI	GCNGC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	2 cut(s)	241, 249
SfaNI	GCATC	1 cut(s)	281
SspMI	CTAG	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	2 cut(s)	87, 153
TaaI	ACNGT	2 cut(s)	110, 218
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	62, 278
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	2 cut(s)	48, 115
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	5 cut(s)	92, 181, 194, 209, 213
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	2 cut(s)	48, 115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.