pycom03g05420

COP9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
4273774 .. 4274004
231 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGTTTGTGAAAAATGATTTGGAGGCATTCAACAGAAATGAGAGCCTCCAAATGAGTTCACTGTTCATTGTGGCAGAGTCATATGGAGGCAACTATTGGTTGATGGAAAAATATATGGTGCTTGCTCGACTATTCCTTTCAGAAGCAACTATTGCTCGACTATTCCTTTCAAAAGCAACTATGTTGTGGTTGGCCATCAAAGGTACTACATATCTAATTTACCTCCTATGA

Protein Analysis

77

Amino Acids

8.85

Weight (kDa)

8.01

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 192
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 2 cut(s) 31, 171
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AoxI GGCC 1 cut(s) 192
BalI TGGCCA 1 cut(s) 194
BccI CCATC 2 cut(s) 97, 203
BshFI GGCC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 1 cut(s) 194
BspANI GGCC 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 204
CviJI RGCY 2 cut(s) 45, 194
CviKI_1 RGCY 2 cut(s) 45, 194
CviQI GTAC 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 192
FaiI YATR 7 cut(s) 82, 84, 114, 116, 182, 211, 229
FauNDI CATATG 1 cut(s) 82
HaeIII GGCC 1 cut(s) 194
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 1 cut(s) 216
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 3 cut(s) 16, 56, 80
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeI CATATG 1 cut(s) 82
PctI GAATGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SchI GAGTC 1 cut(s) 86
SetI ASST 2 cut(s) 205, 225
SgeI CNNG 3 cut(s) 134, 138, 168
Sse9I AATT 1 cut(s) 216
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 127, 157
TasI AATT 1 cut(s) 216
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.