Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4506076 .. 4506474

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGATCAGATCGTCAGCCTCTTGTGGTTCCTTTTGTAGACTTGTCCAATGAAAACATGGAGCCTGGAACAGATGCATGGCTCTTGGCATGCAAACAAGTCCAGCATGCCTTGGAAGAGTTTGGCTGCTTTGAAGCTGCTTACAAAAATGATACTTTGGAAACTCAAAACTCCTTTTTTTCTGCGTTAAAAGATCTTTGTGATCTTCCTTTAGAAACTAAAATGCAGAAGACCAGTGACAAGCCTCTCCACGGCTATTTTGCCAGAAATCCTCTCTTTCCTCACGATTTTTCCACGGGCATTGAAAATCCAGAAACTGCAGAAGGAGCTCAAAACTTCACAAGTATCATGTGGCCTGAAGGAAATGAACGTTTTCGGTATTTTGTTTCTCATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010150 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016679 GO:0016682 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0090693 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

133

Amino Acids

15.01

Weight (kDa)

4.66

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 88	2.1e-07	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AclI	AACGTT	1 cut(s)	370
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	134, 305
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	137, 329
AluI	AGCT	2 cut(s)	137, 329
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	126, 137
Asp700I	GAANNNNTTC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	113, 124
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	127, 138
BlsI	GCNGC	2 cut(s)	128, 139
Bme1390I	CCNGG	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	30, 63
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	111, 250, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	111, 250, 294
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	113, 124
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	251
BsnI	GGCC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	5, 10, 193, 202
BspANI	GGCC	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	30, 63
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	111, 250, 294
BssMI	GATC	4 cut(s)	5, 10, 193, 202
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	91, 108
BstDSI	CCRYGG	2 cut(s)	250, 294
BstKTI	GATC	4 cut(s)	8, 13, 196, 205
BstMBI	GATC	4 cut(s)	5, 10, 193, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	2 cut(s)	93, 110
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	113, 124
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	355
BtgI	CCRYGG	2 cut(s)	250, 294
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	91, 108
CaiI	CAGNNNCTG	1 cut(s)	317
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	5 cut(s)	58, 78, 90, 107, 349
CviJI	RGCY	9 cut(s)	19, 64, 82, 126, 137, 244, 255, 329, 355
CviKI_1	RGCY	9 cut(s)	19, 64, 82, 126, 137, 244, 255, 329, 355
DpnI	GATC	4 cut(s)	7, 12, 195, 204
DpnII	GATC	4 cut(s)	5, 10, 193, 202
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	5 cut(s)	61, 81, 93, 110, 352
FaiI	YATR	5 cut(s)	59, 79, 91, 108, 350
FatI	CATG	5 cut(s)	57, 77, 89, 106, 348
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	127, 138
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	127, 138
GluI	GCNGC	2 cut(s)	127, 138
HaeIII	GGCC	1 cut(s)	355
Hin1II	CATG	5 cut(s)	61, 81, 93, 110, 352
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	284, 311
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	317, 353
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	77, 93, 226, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	61, 81, 93, 110, 352
Kzo9I	GATC	4 cut(s)	5, 10, 193, 202
LmnI	GCTCC	2 cut(s)	61, 326
LpnPI	CCDG	7 cut(s)	51, 78, 116, 247, 277, 324, 369
Lsp1109I	GCAGC	2 cut(s)	113, 124
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	4 cut(s)	7, 12, 195, 204
MboI	GATC	4 cut(s)	5, 10, 193, 202
MboII	GAAGA	3 cut(s)	128, 197, 241
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	331
MnlI	CCTC	4 cut(s)	30, 255, 282, 291
Mph1103I	ATGCAT	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	4 cut(s)	5, 10, 193, 202
NlaIII	CATG	5 cut(s)	61, 81, 93, 110, 352
NlaIV	GGNNCC	2 cut(s)	30, 63
NmuCI	GTSAC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	2 cut(s)	93, 110
PaeI	GCATGC	2 cut(s)	93, 110
PdmI	GAANNNNTTC	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	128, 139
Psp124BI	GAGCTC	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	30, 63
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	127, 138
Sau3AI	GATC	4 cut(s)	5, 10, 193, 202
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	3 cut(s)	139, 331, 373
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	318
SphI	GCATGC	2 cut(s)	93, 110
SstI	GAGCTC	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	126, 137
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	66, 381
TspRI	CASTG	1 cut(s)	241
XceI	RCATGY	2 cut(s)	93, 110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.