Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4885926 .. 4887220

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATCCCGTAGAAGCCTCGAACGGGCTCTCGTTCCGGGTCGGGTTCTCCGGCCACAGTGGCCACCTCCGGCTCGAGCCCCTCTCCACCGTCGAGAGCTCCGACCCCGTCAAGTCTCTCCCTGATTTCATTCTGCCGCCTGCATTTCCTAGGGAGACGCCTGAATCAATAAAAGAGTATATAGAGGAGAAGTATCTATCGCCAAGATTGGACGACGAAGTATTTGCACCTGAAAAAGTTGGGAGGCAGTGGGATTTCGACTGGTTTGATAAGGCAAATGTACCCTTGGAGCCATCACTGCCGCGCTGCGTTGTGGTTCCCACGTGGGAATTGCCGTTTCGGCGCCAGAAGAGTGGGTCGGCCGAATGTCAATGGGAACCTAAATCTGTGGAGGTGGATGTCTCAGAACTTATAGTAGGAGCTCAAGAGTCTGGTTCATTGCCACGTTTGGCTGGACCAGCTAAGGATTTTGTACGGGGGAGCATCAACAACCGCCCTTTTCGTCCGGGAGGCTTGGATGATTCCCAATCTCTAGAAAGAGTTCTTCCTGATGGTGCTTCTAATGGCGAATGGGTACGCGAACTTCTTGTTGGTGGCTCTCCTCAGGCTGTACCTCCAAGCTTTAAGCAAGGAATGGACCTTGGTGATCTGAAGGCCTATCCATGCTCGTGGAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

227

Amino Acids

25.0

Weight (kDa)

4.76

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ski2_N	PF17911	141 - 216	1.8e-08	Ski2 N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	342
AccII	CGCG	2 cut(s)	304, 579
AciI	CCGC	3 cut(s)	137, 302, 493
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	3 cut(s)	52, 61, 360
AcuI	CTGAAG	1 cut(s)	671
AcvI	CACGTG	1 cut(s)	324
AcyI	GRCGYC	2 cut(s)	158, 343
AfaI	GTAC	4 cut(s)	282, 474, 576, 612
AfiI	CCNNNNNNNGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AluBI	AGCT	4 cut(s)	99, 422, 461, 621
AluI	AGCT	4 cut(s)	99, 422, 461, 621
Alw21I	GWGCWC	2 cut(s)	101, 424
Alw26I	GTCTC	3 cut(s)	120, 149, 406
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	4 cut(s)	52, 61, 360, 654
ApeKI	GCWGC	1 cut(s)	306
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	1 cut(s)	540
AspA2I	CCTAGG	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	306, 345
AspS9I	GGNCC	2 cut(s)	455, 637
AsuC2I	CCSGG	2 cut(s)	38, 507
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	455, 637
AvrII	CCTAGG	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	603
BalI	TGGCCA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	342
BanII	GRGCYC	4 cut(s)	30, 81, 101, 424
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BauI	CACGAG	1 cut(s)	667
BbrPI	CACGTG	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	101, 424
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	301, 545
BceAI	ACGGC	1 cut(s)	319
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BcnI	CCSGG	2 cut(s)	38, 507
BcoDI	GTCTC	3 cut(s)	120, 149, 406
BfaI	CTAG	2 cut(s)	150, 533
BfoI	RGCGCY	1 cut(s)	346
BglI	GCCNNNNNGGC	2 cut(s)	60, 340
BisI	GCNGC	3 cut(s)	137, 302, 307
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	3 cut(s)	138, 303, 308
Bme1390I	CCNGG	2 cut(s)	38, 507
Bme18I	GGWCC	2 cut(s)	455, 637
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	455, 637
BmiI	GGNNCC	5 cut(s)	6, 291, 318, 344, 378
BmrFI	CCNGG	2 cut(s)	38, 507
BmsI	GCATC	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	38, 507
BsaAI	YACGTR	1 cut(s)	324
BsaHI	GRCGYC	2 cut(s)	158, 343
BsaJI	CCNNGG	3 cut(s)	149, 285, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	437
BseDI	CCNNGG	3 cut(s)	149, 285, 640
BseGI	GGATG	2 cut(s)	403, 523
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	417, 617
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	200, 591
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	304, 579
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	4 cut(s)	54, 63, 362, 656
BshNI	GGYRCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	101, 424
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	4 cut(s)	37, 51, 70, 506
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	120, 149, 406
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	54, 63, 362, 656
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	4 cut(s)	30, 81, 101, 424
Bsp143I	GATC	2 cut(s)	4, 646
BspACI	CCGC	3 cut(s)	137, 302, 493
BspANI	GGCC	4 cut(s)	54, 63, 362, 656
BspCNI	CTCAG	2 cut(s)	416, 616
BspFNI	CGCG	2 cut(s)	304, 579
BspLI	GGNNCC	5 cut(s)	6, 291, 318, 344, 378
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	149, 285, 640
BssMI	GATC	2 cut(s)	4, 646
BssNI	GRCGYC	2 cut(s)	158, 343
BssSI	CACGAG	1 cut(s)	667
BssT1I	CCWWGG	3 cut(s)	149, 285, 640
Bst2BI	CACGAG	1 cut(s)	667
Bst4CI	ACNGT	2 cut(s)	59, 91
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	2 cut(s)	158, 343
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	403, 462, 603
BstF5I	GGATG	2 cut(s)	403, 523
BstFNI	CGCG	2 cut(s)	304, 579
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	2 cut(s)	306, 345
BstKTI	GATC	2 cut(s)	7, 649
BstMAI	GTCTC	3 cut(s)	120, 149, 406
BstMBI	GATC	2 cut(s)	4, 646
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 298, 340, 458
BstSCI	CCNGG	2 cut(s)	36, 505
BstUI	CGCG	2 cut(s)	304, 579
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	2 cut(s)	353, 669
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	603
BsuRI	GGCC	4 cut(s)	54, 63, 362, 656
BtsCI	GGATG	2 cut(s)	403, 523
BtsI	GCAGTG	2 cut(s)	254, 296
BtsIMutI	CAGTG	3 cut(s)	64, 254, 296
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	2 cut(s)	306, 345
Cfr13I	GGNCC	2 cut(s)	455, 637
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	4 cut(s)	281, 473, 575, 611
CviAII	CATG	1 cut(s)	663
CviQI	GTAC	4 cut(s)	281, 473, 575, 611
DdeI	CTNAG	3 cut(s)	403, 462, 603
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	2 cut(s)	6, 648
DpnII	GATC	2 cut(s)	4, 646
EaeI	YGGCCR	3 cut(s)	52, 61, 360
EagI	CGGCCG	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Ecl136II	GAGCTC	2 cut(s)	99, 422
EclXI	CGGCCG	1 cut(s)	360
Eco130I	CCWWGG	3 cut(s)	149, 285, 640
Eco147I	AGGCCT	1 cut(s)	656
Eco24I	GRGCYC	4 cut(s)	30, 81, 101, 424
Eco47I	GGWCC	2 cut(s)	455, 637
Eco52I	CGGCCG	1 cut(s)	360
Eco53kI	GAGCTC	2 cut(s)	99, 422
Eco57I	CTGAAG	1 cut(s)	671
Eco72I	CACGTG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	2 cut(s)	99, 422
EcoT14I	CCWWGG	3 cut(s)	149, 285, 640
EcoT38I	GRGCYC	4 cut(s)	30, 81, 101, 424
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	3 cut(s)	149, 285, 640
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	1 cut(s)	666
FaiI	YATR	5 cut(s)	180, 182, 413, 664, 679
FatI	CATG	1 cut(s)	662
Fnu4HI	GCNGC	3 cut(s)	137, 302, 307
FokI	GGATG	2 cut(s)	410, 530
FriOI	GRGCYC	4 cut(s)	30, 81, 101, 424
Fsp4HI	GCNGC	3 cut(s)	137, 302, 307
FspBI	CTAG	2 cut(s)	150, 533
GlaI	GCGC	2 cut(s)	305, 344
GluI	GCNGC	3 cut(s)	137, 302, 307
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	4 cut(s)	54, 63, 362, 656
HapII	CCGG	4 cut(s)	37, 51, 70, 506
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	306, 345
Hin1I	GRCGYC	2 cut(s)	158, 343
Hin1II	CATG	1 cut(s)	666
Hin6I	GCGC	2 cut(s)	304, 343
HinP1I	GCGC	2 cut(s)	304, 343
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	3 cut(s)	164, 428, 521
HpaII	CCGG	4 cut(s)	37, 51, 70, 506
HphI	GGTGA	1 cut(s)	656
Hpy188I	TCNGA	3 cut(s)	103, 406, 651
Hpy188III	TCNNGA	4 cut(s)	94, 425, 533, 548
Hpy99I	CGWCG	2 cut(s)	95, 218
HpyAV	CCTTC	1 cut(s)	646
HpyCH4III	ACNGT	2 cut(s)	59, 91
HpyCH4IV	ACGT	2 cut(s)	323, 445
HpyCH4V	TGCA	2 cut(s)	143, 227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 298, 340, 458
HpyF3I	CTNAG	3 cut(s)	403, 462, 603
HpySE526I	ACGT	2 cut(s)	323, 445
Hsp92I	GRCGYC	2 cut(s)	158, 343
Hsp92II	CATG	1 cut(s)	666
HspAI	GCGC	2 cut(s)	304, 343
KasI	GGCGCC	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	4, 646
LmnI	GCTCC	4 cut(s)	104, 289, 419, 480
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	2 cut(s)	150, 533
MaeII	ACGT	2 cut(s)	323, 445
MalI	GATC	2 cut(s)	6, 648
MboI	GATC	2 cut(s)	4, 646
MboII	GAAGA	2 cut(s)	361, 536
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	4 cut(s)	30, 81, 101, 424
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	63
Mly113I	GGCGCC	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	28, 77, 92, 178, 237, 385, 503, 612, 624
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	667
Msp20I	TGGCCA	1 cut(s)	63
MspI	CCGG	4 cut(s)	37, 51, 70, 506
MspR9I	CCNGG	2 cut(s)	38, 507
MvnI	CGCG	2 cut(s)	304, 579
MwoI	GCNNNNNNNGC	4 cut(s)	60, 298, 340, 458
NarI	GGCGCC	1 cut(s)	343
NciI	CCSGG	2 cut(s)	38, 507
NdeII	GATC	2 cut(s)	4, 646
NlaIII	CATG	1 cut(s)	666
NlaIV	GGNNCC	5 cut(s)	6, 291, 318, 344, 378
PaeR7I	CTCGAG	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	656
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	164, 521
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	138, 303, 308
PleI	GAGTC	1 cut(s)	436
PluTI	GGCGCC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	324
PmlI	CACGTG	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	324
Psp124BI	GAGCTC	2 cut(s)	101, 424
PspCI	CACGTG	1 cut(s)	324
PspN4I	GGNNCC	5 cut(s)	6, 291, 318, 344, 378
PspPI	GGNCC	2 cut(s)	455, 637
PspXI	VCTCGAGB	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	4 cut(s)	282, 474, 576, 612
RsaNI	GTAC	4 cut(s)	281, 473, 575, 611
RseI	CAYNNNNRTG	1 cut(s)	667
SacI	GAGCTC	2 cut(s)	101, 424
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	3 cut(s)	137, 302, 307
Sau3AI	GATC	2 cut(s)	4, 646
Sau96I	GGNCC	2 cut(s)	455, 637
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	38, 507
SduI	GDGCHC	4 cut(s)	30, 81, 101, 424
SfaNI	GCATC	1 cut(s)	492
SfiI	GGCCNNNNNGGCC	1 cut(s)	60
SfoI	GGCGCC	1 cut(s)	344
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	2 cut(s)	455, 637
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	2 cut(s)	74, 423
SmoI	CTYRAG	2 cut(s)	74, 423
Sse9I	AATT	1 cut(s)	329
SseBI	AGGCCT	1 cut(s)	656
SsiI	CCGC	3 cut(s)	137, 302, 493
SspDI	GGCGCC	1 cut(s)	342
SspMI	CTAG	2 cut(s)	150, 533
SstI	GAGCTC	2 cut(s)	101, 424
StuI	AGGCCT	1 cut(s)	656
StyD4I	CCNGG	2 cut(s)	36, 505
StyI	CCWWGG	3 cut(s)	149, 285, 640
TaaI	ACNGT	2 cut(s)	59, 91
TaiI	ACGT	2 cut(s)	326, 448
TaqI	TCGA	4 cut(s)	20, 75, 93, 258
TasI	AATT	1 cut(s)	329
TauI	GCSGC	2 cut(s)	139, 304
TfiI	GAWTC	2 cut(s)	164, 521
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	3 cut(s)	64, 254, 303
TseI	GCWGC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	118, 426
TspRI	CASTG	3 cut(s)	64, 254, 303
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	455, 637
XbaI	TCTAGA	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	150, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.