Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4887467 .. 4891413

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGACCTGTTCAAGAAGGCTTGGGAAGAGGATGTTGTTGAATTTGAAGGAGATGGTATGTCAATTATCAGGATCAGAATCTGTTAAGTCAGAGGATGAAGCAAAGGAGGTTGATGTTGCCATCGATACTTCTGAGCCTGAATTGTCTTTGTTGGATGAGATTTTGTCGGTTGCGGCAGGAGAATCAAAGTCAAGATCTAATGGACTTGGTGAAGATGATGAACAAAATCCGAAGAAGGCTTGGGCTATTAGTGGAGGTACTGAATATATTGCAGAGAACTTTGGTGATCTTGTTCCCGACAAAGCACTTGATTTTCCTTTTGAATTGGACAAATTCCAGAAGGAGGCTATTTATTATCTTGAAAAGGGGGACTCAGTATTTGTGGCTGCTCACACATCAGCTGGAAAGACAGTTGTTGCAGAATATGCATTTGCTTTAGCATCAAAACATTGCACCAGAGCTGTGTATACTGCTCCTATCAAAACCATTAGCAATCAAAAATATAGAGATTTGTGTGGAAAATTTGATGTTGGACTTCTCACTGGTGATGTTAGCTTGAGGCCAGAGGCTTCTTGTCTTATTATGACCACCGAAATATTAAGGTCAATGCTTTATCGTGGTGCTGACATAATACGTGATATTGAATGGGTTATCTTTGATGAAGTGCACTATGTCAATGATGTTGAAAGAGGTGTTGTTTGGGAAGAAGTTATTATAATGCTTCCAAGACACATCAATATTGTTCTCCTTTCAGCTACGGTACCAAACAAAGTTGAGTTTGCTGACTGGATCGGACGGACAAAGCAAAAGCAAATCCGTGTTACTGGGACTACAAAAAGACCAGTCCCATTGGAGCACTGTCTATTTTACTCCGGAGAACTTTACAAAATATGTGAAAGCGAAATCTTCATTCCCCAGGGGTTCAAAGCTGCAAAAGATGCATTTAAGAAAAAGAATATGAGTGCCACTACTGGTGGTAGTGGATCACATGCACCAGCTTCCGCTTCTCACGATGGGACTCGATCTCAAAAACAAAGTTCAAACTGGGGCGGAAAACAGAAGAAGCAATCTGGTTCCCAAAATTCAGGGAATTTCTCCCGAACTGGAGGAGCAAATCAAAACAATGGAAATGGCATGAACAGTTGGGGTTTAAGAAGATCGATCAGATGCTTCTTTGTGGTTGTCACTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

398

Amino Acids

43.9

Weight (kDa)

7.04

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	111 - 259	1.2e-23	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	760
AccI	GTMKAC	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	872
AciI	CCGC	3 cut(s)	173, 1002, 1050
AclWI	GGATC	3 cut(s)	79, 797, 991
AcsI	RAATTY	5 cut(s)	40, 332, 521, 1081, 1090
AfaI	GTAC	2 cut(s)	259, 762
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	9 cut(s)	12, 40, 46, 323, 362, 644, 686, 925, 1041
AjnI	CCWGG	1 cut(s)	915
AluBI	AGCT	6 cut(s)	401, 461, 555, 755, 929, 998
AluI	AGCT	6 cut(s)	401, 461, 555, 755, 929, 998
Alw21I	GWGCWC	2 cut(s)	669, 858
Alw44I	GTGCAC	1 cut(s)	665
AlwI	GGATC	3 cut(s)	79, 797, 991
AlwNI	CAGNNNCTG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	872
AoxI	GGCC	1 cut(s)	560
ApaLI	GTGCAC	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	386, 929
ApoI	RAATTY	5 cut(s)	40, 332, 521, 1081, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
Asp718I	GGTACC	1 cut(s)	760
AsuHPI	GGTGA	3 cut(s)	221, 296, 557
BaeGI	GKGCMC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	760
Bbv12I	GWGCWC	2 cut(s)	669, 858
BbvI	GCAGC	2 cut(s)	373, 916
BccI	CCATC	3 cut(s)	46, 128, 1007
BciT130I	CCWGG	1 cut(s)	917
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	3 cut(s)	174, 387, 930
BlsI	GCNGC	3 cut(s)	175, 388, 931
Bme1390I	CCNGG	1 cut(s)	917
BmiI	GGNNCC	2 cut(s)	762, 1075
BmrFI	CCNGG	1 cut(s)	917
BmrI	ACTGGG	2 cut(s)	834, 1054
BmsI	GCATC	3 cut(s)	449, 928, 1157
BmuI	ACTGGG	2 cut(s)	834, 1054
BpmI	CTGGAG	1 cut(s)	1125
BpuEI	CTTGAG	1 cut(s)	577
Bsa29I	ATCGAT	2 cut(s)	123, 1160
BsaAI	YACGTR	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	915, 916
BsaWI	WCCGGW	1 cut(s)	872
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	7 cut(s)	547, 791, 829, 842, 976, 1049, 1108
Bse3DI	GCAATG	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	872
BseBI	CCWGG	1 cut(s)	917
BseCI	ATCGAT	2 cut(s)	123, 1160
BseDI	CCNNGG	2 cut(s)	915, 916
BseGI	GGATG	3 cut(s)	36, 100, 160
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	123, 387
BseNI	ACTGG	7 cut(s)	547, 791, 829, 842, 976, 1049, 1108
BseRI	GAGGAG	1 cut(s)	1122
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	373, 916
BshFI	GGCC	1 cut(s)	562
BshNI	GGYRCC	1 cut(s)	760
BshVI	ATCGAT	2 cut(s)	123, 1160
BsiHKAI	GWGCWC	2 cut(s)	669, 858
BsiSI	CCGG	1 cut(s)	873
BslFI	GGGAC	4 cut(s)	383, 830, 841, 1030
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmFI	GGGAC	4 cut(s)	383, 830, 841, 1030
BsnI	GGCC	1 cut(s)	562
Bsp1286I	GDGCHC	2 cut(s)	669, 858
Bsp13I	TCCGGA	1 cut(s)	872
Bsp143I	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
BspACI	CCGC	3 cut(s)	173, 1002, 1050
BspANI	GGCC	1 cut(s)	562
BspCNI	CTCAG	2 cut(s)	124, 386
BspDI	ATCGAT	2 cut(s)	123, 1160
BspEI	TCCGGA	1 cut(s)	872
BspLI	GGNNCC	2 cut(s)	762, 1075
BspPI	GGATC	3 cut(s)	79, 797, 991
BspT107I	GGYRCC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	7 cut(s)	547, 791, 829, 842, 976, 1049, 1108
BssECI	CCNNGG	2 cut(s)	915, 916
BssMI	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
BssNAI	GTATAC	1 cut(s)	468
Bst1107I	GTATAC	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	4 cut(s)	412, 760, 860, 1142
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	2 cut(s)	425, 938
BstBAI	YACGTR	1 cut(s)	635
BstDEI	CTNAG	2 cut(s)	132, 373
BstF5I	GGATG	3 cut(s)	36, 100, 160
BstKTI	GATC	8 cut(s)	74, 197, 289, 792, 986, 1025, 1160, 1164
BstMBI	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 938
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	1 cut(s)	992
BstSCI	CCNGG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	373, 916
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BstZ17I	GTATAC	1 cut(s)	468
Bsu15I	ATCGAT	2 cut(s)	123, 1160
BsuRI	GGCC	1 cut(s)	562
BsuTUI	ATCGAT	2 cut(s)	123, 1160
BtsCI	GGATG	3 cut(s)	36, 100, 160
BtsIMutI	CAGTG	2 cut(s)	540, 856
CaiI	CAGNNNCTG	1 cut(s)	80
ClaI	ATCGAT	2 cut(s)	123, 1160
Csp6I	GTAC	2 cut(s)	258, 761
CviAII	CATG	2 cut(s)	989, 1135
CviQI	GTAC	2 cut(s)	258, 761
DdeI	CTNAG	2 cut(s)	132, 373
DpnI	GATC	8 cut(s)	73, 196, 288, 791, 985, 1024, 1159, 1163
DpnII	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	1065
EcoRII	CCWGG	1 cut(s)	915
EcoT22I	ATGCAT	2 cut(s)	430, 943
FaeI	CATG	2 cut(s)	992, 1138
FaqI	GGGAC	4 cut(s)	383, 830, 841, 1030
FatI	CATG	2 cut(s)	988, 1134
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	3 cut(s)	174, 387, 930
FokI	GGATG	3 cut(s)	43, 107, 167
Fsp4HI	GCNGC	3 cut(s)	174, 387, 930
GluI	GCNGC	3 cut(s)	174, 387, 930
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	1 cut(s)	562
HapII	CCGG	1 cut(s)	873
Hin1II	CATG	2 cut(s)	992, 1138
HinfI	GANTC	4 cut(s)	77, 182, 371, 1018
HpaII	CCGG	1 cut(s)	873
HphI	GGTGA	3 cut(s)	221, 296, 557
Hpy166II	GTNNAC	2 cut(s)	468, 667
Hpy188I	TCNGA	6 cut(s)	76, 91, 133, 231, 794, 1166
Hpy188III	TCNNGA	9 cut(s)	12, 69, 192, 296, 337, 359, 873, 1010, 1098
Hpy8I	GTNNAC	2 cut(s)	468, 667
HpyAV	CCTTC	4 cut(s)	9, 40, 229, 334
HpyCH4III	ACNGT	4 cut(s)	412, 760, 860, 1142
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	8 cut(s)	272, 419, 428, 453, 667, 932, 941, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 938
HpyF3I	CTNAG	2 cut(s)	132, 373
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	2 cut(s)	992, 1138
Kpn2I	TCCGGA	1 cut(s)	872
KpnI	GGTACC	1 cut(s)	764
Kzo9I	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
LmnI	GCTCC	3 cut(s)	478, 853, 1109
Lsp1109I	GCAGC	2 cut(s)	373, 916
LweI	GCATC	3 cut(s)	449, 928, 1157
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	2 cut(s)	820, 1183
MalI	GATC	8 cut(s)	73, 196, 288, 791, 985, 1024, 1159, 1163
MboI	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
MboII	GAAGA	7 cut(s)	37, 224, 244, 716, 898, 1072, 1167
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	669, 858
MluCI	AATT	8 cut(s)	40, 62, 140, 323, 332, 521, 1081, 1090
MlyI	GAGTC	2 cut(s)	365, 1012
MmeI	TCCRAC	2 cut(s)	132, 511
MnlI	CCTC	9 cut(s)	21, 85, 100, 248, 337, 552, 559, 683, 1100
Mph1103I	ATGCAT	2 cut(s)	430, 943
MroI	TCCGGA	1 cut(s)	872
MseI	TTAA	5 cut(s)	84, 599, 945, 1151, 1192
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	1 cut(s)	873
MspR9I	CCNGG	1 cut(s)	917
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	2 cut(s)	425, 938
NdeII	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
NlaIII	CATG	2 cut(s)	992, 1138
NlaIV	GGNNCC	2 cut(s)	762, 1075
NmuCI	GTSAC	1 cut(s)	1183
NsiI	ATGCAT	2 cut(s)	430, 943
NspI	RCATGY	1 cut(s)	992
PasI	CCCWGGG	1 cut(s)	916
PfeI	GAWTC	2 cut(s)	77, 182
PkrI	GCNGC	3 cut(s)	175, 388, 931
PleI	GAGTC	2 cut(s)	365, 1012
PpsI	GAGTC	2 cut(s)	365, 1012
Ppu21I	YACGTR	1 cut(s)	635
PsiI	TTATAA	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	2 cut(s)	762, 1075
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	259, 762
RsaNI	GTAC	2 cut(s)	258, 761
SaqAI	TTAA	5 cut(s)	84, 599, 945, 1151, 1192
SatI	GCNGC	3 cut(s)	174, 387, 930
Sau3AI	GATC	8 cut(s)	71, 194, 286, 789, 983, 1022, 1157, 1161
SchI	GAGTC	2 cut(s)	365, 1012
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	2 cut(s)	669, 858
SfaNI	GCATC	3 cut(s)	449, 928, 1157
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	8 cut(s)	40, 62, 140, 323, 332, 521, 1081, 1090
SsiI	CCGC	3 cut(s)	173, 1002, 1050
SspI	AATATT	2 cut(s)	597, 739
StyD4I	CCNGG	1 cut(s)	915
TaaI	ACNGT	4 cut(s)	412, 760, 860, 1142
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	3 cut(s)	123, 1021, 1160
TasI	AATT	8 cut(s)	40, 62, 140, 323, 332, 521, 1081, 1090
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	77, 182
Tru1I	TTAA	5 cut(s)	84, 599, 945, 1151, 1192
Tru9I	TTAA	5 cut(s)	84, 599, 945, 1151, 1192
TscAI	CASTG	2 cut(s)	547, 863
TseFI	GTSAC	1 cut(s)	1183
TseI	GCWGC	2 cut(s)	386, 929
Tsp45I	GTSAC	1 cut(s)	1183
TspDTI	ATGAA	5 cut(s)	111, 234, 675, 898, 1151
TspGWI	ACGGA	2 cut(s)	806, 811
TspRI	CASTG	2 cut(s)	547, 863
VneI	GTGCAC	1 cut(s)	665
XapI	RAATTY	5 cut(s)	40, 332, 521, 1081, 1090
XceI	RCATGY	1 cut(s)	992
XmiI	GTMKAC	1 cut(s)	467
Zsp2I	ATGCAT	2 cut(s)	430, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.