pycom03g06800

Serine arginine repetitive matrix protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
5350331 .. 5352215
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
ATGTCTGGTGGCTTCTTCAGGGGTACGTCCGCCGATCAGGACACTAGGTTTTCCAATAAGCAAGCCAAGCTACTAAAATCTCAGAAATTTGCGCCTGAATTGGAACATTTGGTCGATATGTCGAAGGTGAGTATGGATGTTATGCGCCCGTGGATTGCTAATCGGGCAACGGAGCTTCTTGGGTTCGAAGATGAAGTTCTTATCAACTTTATTTATGGTCTTTTGGAAGGAAAGGTGAATGGGAAGGAAATTCAAATATCGCTTACCGGATTTATGGAGAAAAATACTGTGAAGTTTATGAAAGAGCTTTGGACGCTGCTTATCAGTGCGCAAAACAATGCTAGTGGTGTACCTCAACAATTTTTGGATGCCAAACAAGAAGAAGCACGGAAAAAGAAGGAGGAGGCAGACAGGTTTGCAAACGAAATTCAGAAAAAGAAAGAGAAGGAGAGGATAGATCAACAAGAGATGTTGAAGATGCTAGCTTCTGCAATTATTTGGGTTCATTCCTTTTCCTCAAACTACTGTAGGAAGGAGGGGCTGGTAAGAAAGCTAACAATGCTGCATTGGAGCCAAACACAAAGCATATGTCACCAAGGGATTCAAATGATCGTTATGAGGATGAAAGAGGAGCTGAAAAGAGGAATGGTTACTAGGTTTCCAGATCTCCAAATTCAGAAAATTCATCTTTGTCTCCTCGGTAATTATCGTGACTATCATCTTCCGTCATTAATATTAAATATACTGCTCGGTTGCTATAGAGCAAATAAAAATTTGGATTTCAGTTCTTTTAAACAAAGGTCCGCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

271

Amino Acids

31.36

Weight (kDa)

9.39

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWI PF01480 46 - 114 2.4e-27 PWI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 330
AciI CCGC 2 cut(s) 30, 804
AcsI RAATTY 6 cut(s) 86, 249, 426, 672, 681, 772
AfaI GTAC 2 cut(s) 25, 351
AgsI TTSAA 3 cut(s) 254, 475, 605
AluBI AGCT 6 cut(s) 70, 175, 307, 485, 553, 634
AluI AGCT 6 cut(s) 70, 175, 307, 485, 553, 634
Alw26I GTCTC 1 cut(s) 698
ApeKI GCWGC 2 cut(s) 316, 562
ApoI RAATTY 6 cut(s) 86, 249, 426, 672, 681, 772
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
AseI ATTAAT 1 cut(s) 731
AspLEI GCGC 3 cut(s) 94, 147, 331
AspS9I GGNCC 1 cut(s) 801
AsuHPI GGTGA 3 cut(s) 139, 247, 584
AsuII TTCGAA 1 cut(s) 186
AsuNHI GCTAGC 1 cut(s) 481
AvaII GGWCC 1 cut(s) 801
BbvI GCAGC 2 cut(s) 303, 549
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 5 cut(s) 45, 342, 482, 654, 811
BfmI CTRYAG 2 cut(s) 526, 757
BglII AGATCT 1 cut(s) 664
BisI GCNGC 2 cut(s) 317, 563
BlsI GCNGC 2 cut(s) 318, 564
Bme18I GGWCC 1 cut(s) 801
BmgT120I GGNCC 1 cut(s) 801
BmiI GGNNCC 1 cut(s) 572
BmsI GCATC 2 cut(s) 358, 468
BmtI GCTAGC 1 cut(s) 485
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 149, 595, 697
BsaWI WCCGGW 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 149, 595, 697
BseGI GGATG 3 cut(s) 142, 373, 627
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 3 cut(s) 416, 644, 686
BseXI GCAGC 2 cut(s) 303, 549
BsiSI CCGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 698
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 4 cut(s) 34, 457, 609, 664
BspACI CCGC 2 cut(s) 30, 804
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 572
BspOI GCTAGC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 186
BssECI CCNNGG 3 cut(s) 149, 595, 697
BssMI GATC 4 cut(s) 34, 457, 609, 664
BssT1I CCWWGG 1 cut(s) 595
Bst4CI ACNGT 2 cut(s) 289, 527
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 63, 483
BstDEI CTNAG 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 3 cut(s) 142, 373, 627
BstHHI GCGC 3 cut(s) 94, 147, 331
BstKTI GATC 4 cut(s) 37, 460, 612, 667
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 4 cut(s) 34, 457, 609, 664
BstMWI GCNNNNNNNGC 4 cut(s) 67, 164, 313, 559
BstSFI CTRYAG 2 cut(s) 526, 757
BstV1I GCAGC 2 cut(s) 303, 549
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 3 cut(s) 142, 373, 627
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 63, 483
CfoI GCGC 3 cut(s) 94, 147, 331
Cfr13I GGNCC 1 cut(s) 801
CseI GACGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 24, 350
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviQI GTAC 2 cut(s) 24, 350
DdeI CTNAG 1 cut(s) 81
DpnI GATC 4 cut(s) 36, 459, 611, 666
DpnII GATC 4 cut(s) 34, 457, 609, 664
DraI TTTAAA 1 cut(s) 793
EciI GGCGGA 2 cut(s) 19, 793
Eco130I CCWWGG 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 801
EcoT14I CCWWGG 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 595
FauNDI CATATG 1 cut(s) 587
Fnu4HI GCNGC 2 cut(s) 317, 563
FokI GGATG 3 cut(s) 149, 380, 634
Fsp4HI GCNGC 2 cut(s) 317, 563
FspBI CTAG 5 cut(s) 45, 342, 482, 654, 811
FspI TGCGCA 1 cut(s) 330
GlaI GCGC 3 cut(s) 93, 146, 330
GluI GCNGC 2 cut(s) 317, 563
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 322
HhaI GCGC 3 cut(s) 94, 147, 331
Hin6I GCGC 3 cut(s) 92, 145, 329
HinP1I GCGC 3 cut(s) 92, 145, 329
HinfI GANTC 1 cut(s) 601
HpaII CCGG 1 cut(s) 267
HphI GGTGA 3 cut(s) 139, 247, 584
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 3 cut(s) 84, 432, 678
Hpy188III TCNNGA 3 cut(s) 38, 662, 710
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 6 cut(s) 118, 221, 238, 391, 439, 526
HpyCH4III ACNGT 2 cut(s) 289, 527
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 419, 491, 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 164, 313, 559
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 26
HspAI GCGC 3 cut(s) 92, 145, 329
Kzo9I GATC 4 cut(s) 34, 457, 609, 664
LmnI GCTCC 3 cut(s) 172, 570, 631
LpnPI CCDG 7 cut(s) 4, 23, 108, 280, 397, 527, 675
Lsp1109I GCAGC 2 cut(s) 303, 549
LweI GCATC 2 cut(s) 358, 468
MaeI CTAG 5 cut(s) 45, 342, 482, 654, 811
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 590, 649, 710
MalI GATC 4 cut(s) 36, 459, 611, 666
MboI GATC 4 cut(s) 34, 457, 609, 664
MboII GAAGA 5 cut(s) 7, 200, 392, 487, 713
MflI RGATCY 1 cut(s) 664
MseI TTAA 3 cut(s) 731, 737, 792
MspI CCGG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 67, 164, 313, 559
NdeI CATATG 1 cut(s) 587
NdeII GATC 4 cut(s) 34, 457, 609, 664
NheI GCTAGC 1 cut(s) 481
NlaIV GGNNCC 1 cut(s) 572
NmuCI GTSAC 2 cut(s) 590, 710
NsbI TGCGCA 1 cut(s) 330
NspV TTCGAA 1 cut(s) 186
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 2 cut(s) 318, 564
PshBI ATTAAT 1 cut(s) 731
PspN4I GGNNCC 1 cut(s) 572
PspPI GGNCC 1 cut(s) 801
PsuI RGATCY 1 cut(s) 664
RsaI GTAC 2 cut(s) 25, 351
RsaNI GTAC 2 cut(s) 24, 350
SaqAI TTAA 3 cut(s) 731, 737, 792
SatI GCNGC 2 cut(s) 317, 563
Sau3AI GATC 4 cut(s) 34, 457, 609, 664
Sau96I GGNCC 1 cut(s) 801
SfaNI GCATC 2 cut(s) 358, 468
SfcI CTRYAG 2 cut(s) 526, 757
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 801
SsiI CCGC 2 cut(s) 30, 804
SspI AATATT 1 cut(s) 735
SspMI CTAG 5 cut(s) 45, 342, 482, 654, 811
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 2 cut(s) 289, 527
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 114, 122, 186
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 3 cut(s) 731, 737, 792
Tru9I TTAA 3 cut(s) 731, 737, 792
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 590, 710
TseI GCWGC 2 cut(s) 316, 562
Tsp45I GTSAC 2 cut(s) 590, 710
TspDTI ATGAA 5 cut(s) 207, 314, 494, 638, 674
TspGWI ACGGA 3 cut(s) 185, 403, 714
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 801
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 6 cut(s) 86, 249, 426, 672, 681, 772
XspI CTAG 5 cut(s) 45, 342, 482, 654, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.