Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5975105 .. 5976042

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTCGTTCATCTCTTACGTTAACAAAACACACATACACCTGTGTTTTAATGCTCCTCCAATACTCAATGAGCAAGGCAAGAAGAAGTATACTCTGATATCTTACTGCATCATAGCTACTGCCCATGCAGTGGCAAGGTTGTATGCGGCCGCTGAAGCGTATGTTGATGCCTCGGAGAAGTCAGTTACGGGTGATAACTGGTCAAAATTAGATGTTTTGATTATGTTGTATGGGTATTTAGGGAAGGAGAAGCAGTTAGAGAAAACTTGGGGCTCACTGAAAGAACTCCCCAATGTTAGGTCTAAAAGTTACGTGCTGGCAGTTGAAGCATTTGGTAGAATCGGACAACTCAACCGACAGTTCAATTCTATGATATCTGTCTATGCCAAGCATGGCCTAATCGATAAAGCATCCAAGGTTTTCCAGGAGATAAAGACGGTTGGGTGCCAACCAACTGCCATAACTTTTGGGCATCTTGCTTTGGGTTGCTTAAAAGCAGGACTGGTAGAGGAAGAGGAAGCCATTAGGACTCTAGAGTTGGGGATGAGTTCGATGATGAGCAACGTGGTGAGGAATTCTAACCCATGGCATACTTTTGTATACAACACATTGATTAAGGCGTATGTGAAAGCCAAAGTTTATGATTCGAACCTTTTGAAGAGGATGACTCTCGGAGGCGCCAGGCCGGACGCAGAAACCTATAGTCTGATGAAACTTGCCGAGCATTTTCAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010035 GO:0010038 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

246

Amino Acids

27.4

Weight (kDa)

9.19

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	121 - 163	2.4e-08	PPR repeat family
PPR	PF01535	121 - 149	3.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	444, 677
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccI	GTMKAC	2 cut(s)	89, 600
AciI	CCGC	2 cut(s)	146, 150
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	130, 297
AgsI	TTSAA	4 cut(s)	326, 364, 658, 731
AjnI	CCWGG	2 cut(s)	423, 680
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AoxI	GGCC	3 cut(s)	147, 394, 683
ApoI	RAATTY	1 cut(s)	574
AspLEI	GCGC	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	203, 580
AsuII	TTCGAA	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	444, 677
BanII	GRGCYC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	425, 682
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	700
BfoI	RGCGCY	1 cut(s)	681
BisI	GCNGC	2 cut(s)	147, 150
BlsI	GCNGC	2 cut(s)	148, 151
Bme1390I	CCNGG	2 cut(s)	425, 682
BmiI	GGNNCC	2 cut(s)	446, 679
BmrFI	CCNGG	2 cut(s)	425, 682
BmsI	GCATC	4 cut(s)	117, 157, 419, 481
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
Bpu14I	TTCGAA	1 cut(s)	647
Bsa29I	ATCGAT	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	678
BsaJI	CCNNGG	3 cut(s)	171, 414, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 297
Bse1I	ACTGG	2 cut(s)	203, 507
BseBI	CCWGG	2 cut(s)	425, 682
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	3 cut(s)	171, 414, 584
BseGI	GGATG	3 cut(s)	410, 549, 669
BseLI	CCNNNNNNNGG	2 cut(s)	130, 297
BseNI	ACTGG	2 cut(s)	203, 507
BseRI	GAGGAG	1 cut(s)	45
BseX3I	CGGCCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	149, 396, 685
BshNI	GGYRCC	2 cut(s)	444, 677
BshVI	ATCGAT	1 cut(s)	402
BsiEI	CGRYCG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	130, 297
BsnI	GGCC	3 cut(s)	149, 396, 685
Bsp119I	TTCGAA	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	2 cut(s)	146, 150
BspANI	GGCC	3 cut(s)	149, 396, 685
BspDI	ATCGAT	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	446, 679
BspT104I	TTCGAA	1 cut(s)	647
BspT107I	GGYRCC	2 cut(s)	444, 677
BsrI	ACTGG	2 cut(s)	203, 507
BssECI	CCNNGG	3 cut(s)	171, 414, 584
BssNAI	GTATAC	2 cut(s)	90, 601
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	2 cut(s)	414, 584
Bst1107I	GTATAC	2 cut(s)	90, 601
Bst2UI	CCWGG	2 cut(s)	425, 682
Bst4CI	ACNGT	2 cut(s)	360, 439
Bst6I	CTCTTC	2 cut(s)	507, 653
BstACI	GRCGYC	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	410, 549, 669
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	680
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 326
BstNI	CCWGG	2 cut(s)	425, 682
BstSCI	CCNGG	2 cut(s)	423, 680
BstSFI	CTRYAG	1 cut(s)	700
BstZ17I	GTATAC	2 cut(s)	90, 601
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	149, 396, 685
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	3 cut(s)	410, 549, 669
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 275
Cac8I	GCNNGC	1 cut(s)	318
CciNI	GCGGCCGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	680
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	1 cut(s)	698
CviAII	CATG	3 cut(s)	125, 392, 585
CviJI	RGCY	7 cut(s)	116, 149, 273, 396, 521, 632, 685
CviKI_1	RGCY	7 cut(s)	116, 149, 273, 396, 521, 632, 685
DinI	GGCGCC	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	147
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	507, 653
EarI	CTCTTC	2 cut(s)	507, 653
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	414, 584
Eco24I	GRGCYC	1 cut(s)	275
Eco32I	GATATC	2 cut(s)	99, 375
Eco52I	CGGCCG	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	423, 680
EcoRV	GATATC	2 cut(s)	99, 375
EcoT14I	CCWWGG	2 cut(s)	414, 584
EcoT38I	GRGCYC	1 cut(s)	275
EgeI	GGCGCC	1 cut(s)	679
EheI	GGCGCC	1 cut(s)	679
ErhI	CCWWGG	2 cut(s)	414, 584
FaeI	CATG	3 cut(s)	128, 395, 588
FatI	CATG	3 cut(s)	124, 391, 584
FblI	GTMKAC	2 cut(s)	89, 600
Fnu4HI	GCNGC	2 cut(s)	147, 150
FokI	GGATG	3 cut(s)	397, 556, 676
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	147, 150
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	2 cut(s)	147, 150
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	3 cut(s)	149, 396, 685
HapII	CCGG	1 cut(s)	686
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	680
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	3 cut(s)	128, 395, 588
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	4 cut(s)	339, 529, 644, 667
HpaI	GTTAAC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	2 cut(s)	203, 580
Hpy166II	GTNNAC	3 cut(s)	22, 90, 601
Hpy188I	TCNGA	5 cut(s)	96, 175, 344, 674, 708
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	3 cut(s)	22, 90, 601
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	360, 439
HpyCH4IV	ACGT	3 cut(s)	18, 312, 564
HpyCH4V	TGCA	2 cut(s)	108, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 326
HpySE526I	ACGT	3 cut(s)	18, 312, 564
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	3 cut(s)	128, 395, 588
HspAI	GCGC	1 cut(s)	678
KasI	GGCGCC	1 cut(s)	677
KspAI	GTTAAC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	58
LweI	GCATC	4 cut(s)	117, 157, 419, 481
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	3 cut(s)	18, 312, 564
MaeIII	GTNAC	2 cut(s)	184, 308
MboII	GAAGA	3 cut(s)	94, 524, 670
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	3 cut(s)	206, 364, 574
Mly113I	GGCGCC	1 cut(s)	678
MlyI	GAGTC	2 cut(s)	523, 661
MnlI	CCTC	7 cut(s)	66, 181, 502, 508, 564, 654, 668
MseI	TTAA	4 cut(s)	21, 48, 491, 615
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	2 cut(s)	425, 682
MvaI	CCWGG	2 cut(s)	425, 682
MwoI	GCNNNNNNNGC	2 cut(s)	155, 326
NarI	GGCGCC	1 cut(s)	678
NcoI	CCATGG	1 cut(s)	584
NlaIII	CATG	3 cut(s)	128, 395, 588
NlaIV	GGNNCC	2 cut(s)	446, 679
NotI	GCGGCCGC	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	339, 644
PflMI	CCANNNNNTGG	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	148, 151
PleI	GAGTC	2 cut(s)	523, 661
PluTI	GGCGCC	1 cut(s)	681
PpsI	GAGTC	2 cut(s)	523, 661
Ppu21I	YACGTR	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	423, 680
PspGI	CCWGG	2 cut(s)	423, 680
PspN4I	GGNNCC	2 cut(s)	446, 679
SaqAI	TTAA	4 cut(s)	21, 48, 491, 615
SatI	GCNGC	2 cut(s)	147, 150
SchI	GAGTC	2 cut(s)	523, 661
ScrFI	CCNGG	2 cut(s)	425, 682
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	4 cut(s)	117, 157, 419, 481
SfcI	CTRYAG	1 cut(s)	700
SfoI	GGCGCC	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	647
Sse9I	AATT	3 cut(s)	206, 364, 574
SsiI	CCGC	2 cut(s)	146, 150
SspDI	GGCGCC	1 cut(s)	677
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	423, 680
StyI	CCWWGG	2 cut(s)	414, 584
TaaI	ACNGT	2 cut(s)	360, 439
TaiI	ACGT	3 cut(s)	21, 315, 567
TaqI	TCGA	3 cut(s)	402, 551, 647
TasI	AATT	3 cut(s)	206, 364, 574
TauI	GCSGC	2 cut(s)	149, 152
TfiI	GAWTC	2 cut(s)	339, 644
Tru1I	TTAA	4 cut(s)	21, 48, 491, 615
Tru9I	TTAA	4 cut(s)	21, 48, 491, 615
TscAI	CASTG	2 cut(s)	135, 282
TspDTI	ATGAA	1 cut(s)	725
TspRI	CASTG	2 cut(s)	135, 282
Van91I	CCANNNNNTGG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	574
XbaI	TCTAGA	1 cut(s)	532
XmiI	GTMKAC	2 cut(s)	89, 600
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.