pycom03g07640

eukaryotic translation initiation factor-related

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
6061189 .. 6061668
480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGACGCTCAAAGATTTCCATGGCGGGTCGATTCCCTCTGATCTCCCTCTTCCTTCTGCTCCTGGGGGGTTTTTGGTTGATTCAGTTCGCGTTAGGGTTTATGAGGTGGAGATCTCGCGGAATGGCGCAGTAGGATTTGACCAGTTGGTTCACAAAAATTGTATTTGCCTGTGTCTCCATTTCACAAAAATTGTGTCTCCATTTCTTATATTTGCGTCTGTCTCCAACCGAGGGTCAGATGACTCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.03

Weight (kDa)

6.23

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 90, 118
AciI CCGC 2 cut(s) 24, 118
AfiI CCNNNNNNNGG 1 cut(s) 231
AjnI CCWGG 1 cut(s) 61
Alw26I GTCTC 3 cut(s) 179, 201, 226
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 3 cut(s) 179, 201, 226
BglII AGATCT 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 19, 62, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 19, 62, 229
BseLI CCNNNNNNNGG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 90, 118
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 3 cut(s) 179, 201, 226
Bsp143I GATC 2 cut(s) 40, 111
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 2 cut(s) 24, 118
BspFNI CGCG 2 cut(s) 90, 118
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 19, 62, 229
BssMI GATC 2 cut(s) 40, 111
BssT1I CCWWGG 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 19
BstFNI CGCG 2 cut(s) 90, 118
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 43, 114
BstMAI GTCTC 3 cut(s) 179, 201, 226
BstMBI GATC 2 cut(s) 40, 111
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstUI CGCG 2 cut(s) 90, 118
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 19
CfoI GCGC 1 cut(s) 128
CseI GACGC 2 cut(s) 13, 204
CviAII CATG 1 cut(s) 20
DpnI GATC 2 cut(s) 42, 113
DpnII GATC 2 cut(s) 40, 111
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 1 cut(s) 23
FaiI YATR 3 cut(s) 21, 102, 209
FatI CATG 1 cut(s) 19
FauI CCCGC 1 cut(s) 17
GlaI GCGC 1 cut(s) 127
HgaI GACGC 2 cut(s) 13, 204
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 3 cut(s) 31, 80, 242
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 40, 238
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 40, 111
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 48, 75, 155, 182
MalI GATC 2 cut(s) 42, 113
MboI GATC 2 cut(s) 40, 111
MboII GAAGA 1 cut(s) 41
MflI RGATCY 1 cut(s) 111
MluCI AATT 2 cut(s) 157, 189
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 46, 57, 97, 224
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 90, 118
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 40, 111
NlaIII CATG 1 cut(s) 23
PfeI GAWTC 2 cut(s) 31, 80
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 111
Sau3AI GATC 2 cut(s) 40, 111
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 63
SetI ASST 1 cut(s) 108
Sse9I AATT 2 cut(s) 157, 189
SsiI CCGC 2 cut(s) 24, 118
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 19
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 157, 189
TfiI GAWTC 2 cut(s) 31, 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.