Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0020250

Physical Location & Seq

Genomic Coordinates Forward (+)

6338343 .. 6338708

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTCGAGCTCTTGATCAGACTGAAGAGGATTACATGGAAATGGTGGAAAAGACTCTTGACAAAAATGCAGAACTTGCTTTGATGGGATCTTGTGTTTTAGTGGTGATAGTGAAAGATCAAAATGTGTATGTCATGAACCTTGGTGATAGCCATGTAATTTTGGCACAAGAAAGACCAAATGATCGCCATCCTAACCCAAATTTTGGAAAGGATGAAGTGTGGCATAAGAATAAATTCAGAGAGTCATTAGCGCGTATGGAGCTCGACAGAATATCAGAGGAATCTCCGGTGCATAATCAGAATGGTCAAGTAAATAAAAACAGAGAGATTTCTTTATGCAGATTAAAGATGAGGGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005543 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010556 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0036211 GO:0042578 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:0098727 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

122

Amino Acids

14.03

Weight (kDa)

5.8

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	14 - 108	7.7e-06	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46920 AT2G46920 AT2G46920 AT2G46920
prunus_persica	Prupe.3G000700_v2.0.a1
pyrus_communis	pycom03g07930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccII	CGCG	1 cut(s)	256
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	202, 236
AcuI	CTGAAG	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	11, 265
AluI	AGCT	2 cut(s)	11, 265
Alw21I	GWGCWC	2 cut(s)	13, 267
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	202, 236
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	118, 158
AvaI	CYCGRG	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	13, 267
Bbv12I	GWGCWC	2 cut(s)	13, 267
BccI	CCATC	2 cut(s)	79, 198
BclI	TGATCA	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	6
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	190, 220
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	256
BsiHKAI	GWGCWC	2 cut(s)	13, 267
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	13, 267
Bsp143I	GATC	4 cut(s)	16, 89, 118, 184
BspFNI	CGCG	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	135
BspPI	GGATC	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	4 cut(s)	16, 89, 118, 184
BssT1I	CCWWGG	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	190, 220
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	4 cut(s)	19, 92, 121, 187
BstMBI	GATC	4 cut(s)	16, 89, 118, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 262
BstUI	CGCG	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	190, 220
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	1 cut(s)	256
CviAII	CATG	3 cut(s)	37, 136, 155
CviJI	RGCY	4 cut(s)	5, 11, 153, 265
CviKI_1	RGCY	4 cut(s)	5, 11, 153, 265
DpnI	GATC	4 cut(s)	18, 91, 120, 186
DpnII	GATC	4 cut(s)	16, 89, 118, 184
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	2 cut(s)	11, 265
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	13, 267
Eco53kI	GAGCTC	2 cut(s)	11, 265
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	2 cut(s)	11, 265
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	13, 267
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	3 cut(s)	40, 139, 158
FaiI	YATR	8 cut(s)	38, 132, 137, 156, 228, 260, 297, 340
FatI	CATG	3 cut(s)	36, 135, 154
FbaI	TGATCA	1 cut(s)	16
FokI	GGATG	2 cut(s)	177, 227
FriOI	GRGCYC	2 cut(s)	13, 267
GlaI	GCGC	1 cut(s)	255
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	3 cut(s)	40, 139, 158
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	3 cut(s)	55, 245, 284
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	118, 158
Hpy188I	TCNGA	4 cut(s)	21, 242, 280, 303
Hpy188III	TCNNGA	3 cut(s)	14, 59, 136
HpyCH4V	TGCA	3 cut(s)	71, 295, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 262
Hsp92II	CATG	3 cut(s)	40, 139, 158
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 89, 118, 184
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	1 cut(s)	303
MalI	GATC	4 cut(s)	18, 91, 120, 186
MboI	GATC	4 cut(s)	16, 89, 118, 184
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	13, 267
MluCI	AATT	4 cut(s)	159, 202, 236, 360
MlyI	GAGTC	2 cut(s)	49, 254
MnlI	CCTC	3 cut(s)	22, 274, 348
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	2 cut(s)	347, 364
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	77, 262
NdeII	GATC	4 cut(s)	16, 89, 118, 184
NlaIII	CATG	3 cut(s)	40, 139, 158
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	206
PleI	GAGTC	2 cut(s)	49, 253
PpsI	GAGTC	2 cut(s)	49, 253
Psp124BI	GAGCTC	2 cut(s)	13, 267
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	41
SacI	GAGCTC	2 cut(s)	13, 267
SaqAI	TTAA	2 cut(s)	347, 364
Sau3AI	GATC	4 cut(s)	16, 89, 118, 184
SchI	GAGTC	2 cut(s)	49, 254
SduI	GDGCHC	2 cut(s)	13, 267
SetI	ASST	3 cut(s)	13, 144, 267
Sfr274I	CTCGAG	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	4 cut(s)	159, 202, 236, 360
SstI	GAGCTC	2 cut(s)	13, 267
StyI	CCWWGG	1 cut(s)	142
TaqI	TCGA	2 cut(s)	7, 267
TasI	AATT	4 cut(s)	159, 202, 236, 360
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	2 cut(s)	347, 364
Tru9I	TTAA	2 cut(s)	347, 364
TspDTI	ATGAA	2 cut(s)	152, 231
Van91I	CCANNNNNTGG	1 cut(s)	206
XapI	RAATTY	2 cut(s)	202, 236
XhoI	CTCGAG	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.