pycom03g08090

Calcium-dependent channel, 7TM region, putative phosphate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
6510317 .. 6510671
355 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGCGGTTTTGGCTGTGCTGGGGGATCAGTTCTCGAAGACGACCATCAATCACATTGAGAAAGGTTCGGCTTTGCTTTGGGTGCATTTCGTTTTCGTGGTTGTTGTTCTTGTTCTTGTTCTTGTTCCTGTGCATTTTGGTATTTCTGCTATTGAGGGTTTGAATAGCTTGGATGTCCTCCATGAAGAGGAGTGGATCGGGTGGAGGGATGGAGAAGACGAAGGGGGTGGAGGGGTGGATGGGTGGAGCCGTGGAGGGGGTTCCAGTGGGGAAGACGAAGGGGGAAGGAAAAAAGGGGGTTCTGGCTTTTAG

Protein Analysis

104

Amino Acids

10.88

Weight (kDa)

4.73

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 33, 203
AfiI CCNNNNNNNGG 2 cut(s) 187, 256
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AlwI GGATC 2 cut(s) 33, 203
BbsI GAAGAC 3 cut(s) 44, 222, 279
BccI CCATC 3 cut(s) 53, 203, 233
BceAI ACGGC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 248, 262
BpiI GAAGAC 3 cut(s) 44, 222, 279
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 256
Bse1I ACTGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 3 cut(s) 178, 214, 244
BseLI CCNNNNNNNGG 2 cut(s) 187, 256
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 203
BseYI CCCAGC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 187, 256
Bsp143I GATC 2 cut(s) 25, 195
BspACI CCGC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 248, 262
BspPI GGATC 2 cut(s) 33, 203
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 25, 195
Bst6I CTCTTC 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 3 cut(s) 178, 214, 244
BstKTI GATC 2 cut(s) 28, 198
BstMBI GATC 2 cut(s) 25, 195
BstMWI GCNNNNNNNGC 2 cut(s) 11, 82
BstV2I GAAGAC 3 cut(s) 44, 222, 279
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 3 cut(s) 178, 214, 244
BtsIMutI CAGTG 1 cut(s) 271
CviAII CATG 1 cut(s) 182
CviJI RGCY 5 cut(s) 14, 71, 168, 249, 306
CviKI_1 RGCY 5 cut(s) 14, 71, 168, 249, 306
DpnI GATC 2 cut(s) 27, 197
DpnII GATC 2 cut(s) 25, 195
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
FaeI CATG 1 cut(s) 185
FaiI YATR 1 cut(s) 183
FatI CATG 1 cut(s) 181
FokI GGATG 3 cut(s) 185, 221, 251
GsaI CCCAGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 185
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 3 cut(s) 215, 272, 279
HpyCH4V TGCA 2 cut(s) 85, 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 82
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 2 cut(s) 25, 195
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 4 cut(s) 5, 141, 277, 288
MalI GATC 2 cut(s) 27, 197
MboI GATC 2 cut(s) 25, 195
MboII GAAGA 4 cut(s) 49, 197, 227, 284
MnlI CCTC 6 cut(s) 148, 181, 188, 198, 224, 248
MwoI GCNNNNNNNGC 2 cut(s) 11, 82
NdeII GATC 2 cut(s) 25, 195
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 248, 262
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 248, 262
Sau3AI GATC 2 cut(s) 25, 195
SetI ASST 2 cut(s) 67, 170
SsiI CCGC 1 cut(s) 5
TaqI TCGA 1 cut(s) 35
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.