pycom03g08830

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
7253536 .. 7254162
627 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGTCTTCTGCAAAACCATGGGCATCAGCGACAAGGATATTGTTGCTCTCTCCGGTGGTCACACCCTGGTACGTTAACTTTTATTCTCTTGATTTCTTTTCTGAAAACTGTGCCAGGTTATGTAGTCGATCGGAAATCCGTTGTTATTTGGTCAATGACAATACCGATTTCTATTTGTGCGATGGCAATATGGTATGTTGCAGGGGAAGGTGCCACAAGGAGCGATCTGGATTTGAAGGACCTTGGACTCCCAACACCCTTATCTTTGACAACTCCTACTTCAAGGTGCTTCTCGGTGGAGACCAGGAGGGTCTTCTGATGCTTCCAAGTGACAAGGCTCCTCTGGATGACCCTGTCTTCCGCCCTCTTGTGGAAAAATATGCTGCGGTGCGTGTCTTCAGTAGAACTTATTCTTCTGTGTTCTTATTCATCACCTACGTGCAATTACTGATTGTCAAATTTATCCTTTTTGTTTCTCAGGACGAAGATGCTTTCTTTGCCGACTATGCTGAAGCTCACATGAAGCTTTCCGAGCTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00480 map00053 map00480
Pfam Domains
Protein Families
peroxidase

Protein Analysis

181

Amino Acids

20.62

Weight (kDa)

5.17

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AciI CCGC 2 cut(s) 361, 386
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 2 cut(s) 382, 531
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 370, 537
AgsI TTSAA 2 cut(s) 236, 283
AjnI CCWGG 3 cut(s) 65, 113, 303
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 3 cut(s) 515, 526, 535
AluI AGCT 3 cut(s) 515, 526, 535
Alw26I GTCTC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 210
BbsI GAAGAC 3 cut(s) 305, 349, 388
BbvI GCAGC 1 cut(s) 370
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 3 cut(s) 67, 115, 305
BcoDI GTCTC 1 cut(s) 294
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 3 cut(s) 67, 115, 305
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 212, 339
BmrFI CCNGG 3 cut(s) 67, 115, 305
BmsI GCATC 3 cut(s) 32, 309, 478
BpiI GAAGAC 3 cut(s) 305, 349, 388
BsaAI YACGTR 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 17, 65, 242
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 537
BseBI CCWGG 3 cut(s) 67, 115, 305
BseDI CCNNGG 3 cut(s) 17, 65, 242
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 370, 537
BseMII CTCAG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 370
Bsh1285I CGRYCG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 370, 537
BsmAI GTCTC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 128, 224
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 2 cut(s) 361, 386
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 212, 339
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 294
BssECI CCNNGG 3 cut(s) 17, 65, 242
BssMI GATC 2 cut(s) 128, 224
BssT1I CCWWGG 2 cut(s) 17, 242
Bst2UI CCWGG 3 cut(s) 67, 115, 305
Bst4CI ACNGT 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 439
BstDEI CTNAG 1 cut(s) 477
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 131, 227
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 2 cut(s) 128, 224
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 3 cut(s) 497, 506, 532
BstNI CCWGG 3 cut(s) 67, 115, 305
BstSCI CCNGG 3 cut(s) 65, 113, 303
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 3 cut(s) 305, 349, 388
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 18, 520
CviJI RGCY 4 cut(s) 338, 515, 526, 535
CviKI_1 RGCY 4 cut(s) 338, 515, 526, 535
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 477
DpnI GATC 2 cut(s) 130, 226
DpnII GATC 2 cut(s) 128, 224
EciI GGCGGA 1 cut(s) 350
Eco130I CCWWGG 2 cut(s) 17, 242
Eco31I GGTCTC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 382, 531
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 3 cut(s) 65, 113, 303
EcoT14I CCWWGG 2 cut(s) 17, 242
ErhI CCWWGG 2 cut(s) 17, 242
FaeI CATG 2 cut(s) 21, 523
FaiI YATR 7 cut(s) 19, 121, 191, 196, 381, 507, 521
FatI CATG 2 cut(s) 17, 519
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 384
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 21, 523
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 1 cut(s) 247
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 103, 133, 318, 532
Hpy188III TCNNGA 4 cut(s) 89, 228, 344, 479
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 201, 230
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 2 cut(s) 72, 438
HpyCH4V TGCA 3 cut(s) 11, 201, 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 497, 506, 532
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 2 cut(s) 72, 438
Hsp92II CATG 2 cut(s) 21, 523
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 128, 224
LmnI GCTCC 2 cut(s) 220, 343
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 3 cut(s) 32, 309, 478
MaeII ACGT 2 cut(s) 72, 438
MaeIII GTNAC 2 cut(s) 58, 329
MalI GATC 2 cut(s) 130, 226
MboI GATC 2 cut(s) 128, 224
MboII GAAGA 5 cut(s) 305, 349, 388, 405, 497
MluCI AATT 2 cut(s) 443, 458
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 3 cut(s) 301, 351, 375
MroXI GAANNNNTTC 1 cut(s) 409
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 3 cut(s) 67, 115, 305
MvaI CCWGG 3 cut(s) 67, 115, 305
MwoI GCNNNNNNNGC 3 cut(s) 497, 506, 532
NcoI CCATGG 1 cut(s) 17
NdeII GATC 2 cut(s) 128, 224
NlaIII CATG 2 cut(s) 21, 523
NlaIV GGNNCC 2 cut(s) 212, 339
NmuCI GTSAC 2 cut(s) 58, 329
OliI CACNNNNGTG 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 409
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 385
Ple19I CGATCG 1 cut(s) 131
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 3 cut(s) 65, 113, 303
PspGI CCWGG 3 cut(s) 65, 113, 303
PspN4I GGNNCC 2 cut(s) 212, 339
PspPI GGNCC 1 cut(s) 239
PspPPI RGGWCCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 353
PvuI CGATCG 1 cut(s) 131
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 128, 224
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 67, 115, 305
SfaNI GCATC 3 cut(s) 32, 309, 478
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 437
Sse9I AATT 2 cut(s) 443, 458
SsiI CCGC 2 cut(s) 361, 386
StyD4I CCNGG 3 cut(s) 65, 113, 303
StyI CCWWGG 2 cut(s) 17, 242
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 2 cut(s) 75, 441
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 443, 458
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseFI GTSAC 2 cut(s) 58, 329
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 2 cut(s) 58, 329
TspDTI ATGAA 2 cut(s) 418, 536
TspGWI ACGGA 1 cut(s) 128
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.