pycom03g09090

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
7558444 .. 7558629
186 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGTTTCTCAAGTCCAACGACTCCTCAGGGGGCCAACCACCCAACCCCTTTTCCTCGACCCCGAAGCCCATCACTTCCTCCGGCTCCATCGCCACTGCTGCCTACCTCCAGAGCTTCTTCGTTGACTTTAACTTTTTCGACGGCCTGGGCGGAACTCTCTACGAGTTTCGGGGGTTAGGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.54

Weight (kDa)

4.68

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
AoxI GGCC 2 cut(s) 31, 142
ApeKI GCWGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 25
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 77, 95
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 146
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 32, 85
BmrFI CCNGG 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 145
Bse21I CCTNAGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 2 cut(s) 33, 144
BsiSI CCGG 1 cut(s) 81
BsnI GGCC 2 cut(s) 33, 144
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 33, 144
BspCNI CTCAG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 32, 85
BssECI CCNNGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 33, 144
BtgZI GCGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 31
CviJI RGCY 5 cut(s) 33, 67, 84, 114, 144
CviKI_1 RGCY 5 cut(s) 33, 67, 84, 114, 144
DdeI CTNAG 1 cut(s) 25
EciI GGCGGA 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 2 cut(s) 33, 144
HapII CCGG 1 cut(s) 81
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 25
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 12, 94, 122, 131, 158
Lsp1109I GCAGC 1 cut(s) 85
MboII GAAGA 1 cut(s) 109
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 34, 64, 88, 116
MseI TTAA 1 cut(s) 129
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 32, 85
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 32, 85
PspPI GGNCC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 146
SetI ASST 3 cut(s) 108, 116, 181
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SsiI CCGC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 144
TaqI TCGA 2 cut(s) 56, 138
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 98
TspRI CASTG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.