Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8637498 .. 8640366

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTTTTATTTCTTCTGCTACATGTCCTGATTCCAGCTTCTTCTTGGAGTACAAAGATGAAAATGGTCTGAGAAAATCTTGCATGGCGGCGAGTCATCGAGTTGGAGACGCTACCGCCACTGCCACCACCGCTGGTTTGTCATCGGAACTAGGACCTTCCAATCACCATGTCCCTTATGCTGTTCTTCATGGGATGAATGCTTCTTCCACCAGTTTTATTAATCAAGAAGGATCTGCCTTTGATTTTGGGGAGCTGGAAGAAGCAATTGCGCGGCAAGTTAGAAATGATGAAGCTCAAGCACCTTTATTTACAGGAGGAGGAGGAGCAGGCAGGCCTGCTGCAACTCTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCACCAAACACCAGGAGGGAGTTCAAAGTCAGGAGAGGAAGAAAGCACAGACTCAGGATCACAAGTGAACACTCTAACAACAACAACAACAACAAATCAGTTGGAATTGGAACCAGAATCTCCCATGAGTAAAAACCCTTCTTCCTCACAAGCTGCTTTTGATCAGAAGCATCTACAATTTCAACAGCAAAAGCAACAGCAAGAAATGGCAATTAGTGACACCGGACCTAATTCACAAACCCCATCAACTCAAAAACCCTCCCAAGAAAAGAGGAAGGGAGCTGGTTCAACATCAGAGAATAAACAACTTGATGCTAAGACATTGAGACGATTAGCTCAAAACAGAGAAGCTGCAAGAAAAAGCCGCCTCAGAAAAAAGGCTTATGTACAGCAGCTAGAGTCAAGCAGGATAAAGCTTACACAGCTTGAGCAAGACCTTCAAAGAGCGCGCGCTCAGGGTTTGTTCTTGGGTGGTTGTGGGGGTGGTCTTGGCAATATCAGCTCAGGTGAGTTTCTTGAATTAATCTACAACATTATGGACAAATTAATGACTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

313

Amino Acids

33.76

Weight (kDa)

6.34

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	274, 829, 831
AciI	CCGC	5 cut(s)	89, 117, 132, 274, 745
AclWI	GGATC	2 cut(s)	241, 445
AcoI	YGGCCR	1 cut(s)	368
AfaI	GTAC	2 cut(s)	53, 768
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	405, 563, 669, 821, 899
AjnI	CCWGG	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	102, 700
AlwI	GGATC	2 cut(s)	241, 445
AoxI	GGCC	2 cut(s)	335, 368
ApeKI	GCWGC	4 cut(s)	341, 533, 731, 772
AseI	ATTAAT	3 cut(s)	222, 902, 926
AspLEI	GCGC	4 cut(s)	274, 829, 831, 833
AspS9I	GGNCC	2 cut(s)	155, 605
AsuHPI	GGTGA	2 cut(s)	158, 899
AvaII	GGWCC	2 cut(s)	155, 605
BalI	TGGCCA	1 cut(s)	370
BarI	GAAGNNNNNNTAC	2 cut(s)	502, 534
BbvI	GCAGC	4 cut(s)	328, 520, 718, 784
BccI	CCATC	1 cut(s)	631
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	102, 700
BfaI	CTAG	2 cut(s)	152, 776
BisI	GCNGC	7 cut(s)	90, 275, 342, 534, 732, 745, 773
BlsI	GCNGC	7 cut(s)	91, 276, 343, 535, 733, 746, 774
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	2 cut(s)	155, 605
BmgT120I	GGNCC	2 cut(s)	155, 605
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	559, 682
Bpu10I	CCTNAGC	2 cut(s)	834, 883
BpuEI	CTTGAG	2 cut(s)	282, 827
BsaWI	WCCGGW	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	201
BseMII	CTCAG	5 cut(s)	62, 447, 763, 848, 897
BseNI	ACTGG	1 cut(s)	213
BsePI	GCGCGC	2 cut(s)	827, 829
BseRI	GAGGAG	3 cut(s)	333, 336, 339
BseXI	GCAGC	4 cut(s)	328, 520, 718, 784
Bsh1236I	CGCG	3 cut(s)	274, 829, 831
BshFI	GGCC	2 cut(s)	337, 370
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	102, 700
BsmBI	CGTCTC	2 cut(s)	102, 700
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	337, 370
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	3 cut(s)	233, 437, 541
BspACI	CCGC	5 cut(s)	89, 117, 132, 274, 745
BspANI	GGCC	2 cut(s)	337, 370
BspCNI	CTCAG	5 cut(s)	63, 446, 762, 847, 896
BspFNI	CGCG	3 cut(s)	274, 829, 831
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	241, 445
BsrGI	TGTACA	1 cut(s)	766
BsrI	ACTGG	1 cut(s)	213
BssHII	GCGCGC	2 cut(s)	827, 829
BssMI	GATC	3 cut(s)	233, 437, 541
Bst2UI	CCWGG	1 cut(s)	393
BstAUI	TGTACA	1 cut(s)	766
BstC8I	GCNNGC	5 cut(s)	331, 335, 339, 829, 831
BstDEI	CTNAG	6 cut(s)	71, 433, 696, 749, 834, 883
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	3 cut(s)	274, 829, 831
BstHHI	GCGC	4 cut(s)	274, 829, 831, 833
BstKTI	GATC	3 cut(s)	236, 440, 544
BstMAI	GTCTC	2 cut(s)	102, 700
BstMBI	GATC	3 cut(s)	233, 437, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 802, 879
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	391
BstUI	CGCG	3 cut(s)	274, 829, 831
BstV1I	GCAGC	4 cut(s)	328, 520, 718, 784
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	337, 370
BtsCI	GGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	5 cut(s)	331, 335, 339, 829, 831
CfoI	GCGC	4 cut(s)	274, 829, 831, 833
Cfr13I	GGNCC	2 cut(s)	155, 605
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	52, 767
CviAII	CATG	5 cut(s)	24, 85, 170, 191, 505
CviQI	GTAC	2 cut(s)	52, 767
DdeI	CTNAG	6 cut(s)	71, 433, 696, 749, 834, 883
DpnI	GATC	3 cut(s)	235, 439, 543
DpnII	GATC	3 cut(s)	233, 437, 541
EaeI	YGGCCR	1 cut(s)	368
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	155, 605
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	391
Esp3I	CGTCTC	2 cut(s)	102, 700
FaeI	CATG	5 cut(s)	27, 88, 173, 194, 508
FaiI	YATR	8 cut(s)	25, 86, 171, 180, 192, 506, 765, 917
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	5 cut(s)	23, 84, 169, 190, 504
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	7 cut(s)	90, 275, 342, 534, 732, 745, 773
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	7 cut(s)	90, 275, 342, 534, 732, 745, 773
FspBI	CTAG	2 cut(s)	152, 776
GlaI	GCGC	4 cut(s)	273, 828, 830, 832
GluI	GCNGC	7 cut(s)	90, 275, 342, 534, 732, 745, 773
HaeIII	GGCC	2 cut(s)	337, 370
HapII	CCGG	1 cut(s)	603
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	4 cut(s)	274, 829, 831, 833
Hin1II	CATG	5 cut(s)	27, 88, 173, 194, 508
Hin6I	GCGC	4 cut(s)	272, 827, 829, 831
HinP1I	GCGC	4 cut(s)	272, 827, 829, 831
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	6 cut(s)	32, 94, 378, 431, 497, 779
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	2 cut(s)	158, 899
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	5 cut(s)	72, 148, 546, 676, 752
Hpy188III	TCNNGA	6 cut(s)	29, 227, 350, 411, 435, 896
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	6 cut(s)	168, 224, 372, 528, 649, 827
HpyCH4V	TGCA	3 cut(s)	84, 344, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 802, 879
HpyF3I	CTNAG	6 cut(s)	71, 433, 696, 749, 834, 883
Hsp92II	CATG	5 cut(s)	27, 88, 173, 194, 508
HspAI	GCGC	4 cut(s)	272, 827, 829, 831
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	233, 437, 541
LmnI	GCTCC	3 cut(s)	253, 326, 659
Lsp1109I	GCAGC	4 cut(s)	328, 520, 718, 784
LweI	GCATC	2 cut(s)	559, 682
MaeI	CTAG	2 cut(s)	152, 776
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	3 cut(s)	235, 439, 543
MboI	GATC	3 cut(s)	233, 437, 541
MboII	GAAGA	7 cut(s)	6, 34, 179, 198, 272, 431, 513
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	7 cut(s)	267, 485, 557, 591, 610, 899, 923
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	3 cut(s)	103, 425, 788
MmeI	TCCRAC	2 cut(s)	85, 462
MnlI	CCTC	9 cut(s)	311, 314, 317, 389, 409, 535, 645, 649, 758
Mox20I	TGGCCA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	3 cut(s)	222, 902, 926
Msp20I	TGGCCA	1 cut(s)	370
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	3 cut(s)	274, 829, 831
MwoI	GCNNNNNNNGC	3 cut(s)	131, 802, 879
NdeII	GATC	3 cut(s)	233, 437, 541
NlaIII	CATG	5 cut(s)	27, 88, 173, 194, 508
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	596
NspI	RCATGY	1 cut(s)	27
PauI	GCGCGC	2 cut(s)	827, 829
PceI	AGGCCT	1 cut(s)	337
PciI	ACATGT	1 cut(s)	23
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	32, 378, 497
PkrI	GCNGC	7 cut(s)	91, 276, 343, 535, 733, 746, 774
PleI	GAGTC	3 cut(s)	102, 425, 787
PpsI	GAGTC	3 cut(s)	102, 425, 787
PpuMI	RGGWCCY	1 cut(s)	155
PscI	ACATGT	1 cut(s)	23
PshBI	ATTAAT	3 cut(s)	222, 902, 926
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	2 cut(s)	155, 605
PspPPI	RGGWCCY	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	233
PteI	GCGCGC	2 cut(s)	827, 829
RsaI	GTAC	2 cut(s)	53, 768
RsaNI	GTAC	2 cut(s)	52, 767
SaqAI	TTAA	3 cut(s)	222, 902, 926
SatI	GCNGC	7 cut(s)	90, 275, 342, 534, 732, 745, 773
Sau3AI	GATC	3 cut(s)	233, 437, 541
Sau96I	GGNCC	2 cut(s)	155, 605
SchI	GAGTC	3 cut(s)	103, 425, 788
ScrFI	CCNGG	1 cut(s)	393
SfaNI	GCATC	2 cut(s)	559, 682
SinI	GGWCC	2 cut(s)	155, 605
SmlI	CTYRAG	2 cut(s)	297, 806
SmoI	CTYRAG	2 cut(s)	297, 806
Sse9I	AATT	7 cut(s)	267, 485, 557, 591, 610, 899, 923
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	5 cut(s)	89, 117, 132, 274, 745
SspMI	CTAG	2 cut(s)	152, 776
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	391
TaqI	TCGA	1 cut(s)	100
TasI	AATT	7 cut(s)	267, 485, 557, 591, 610, 899, 923
TatI	WGTACW	2 cut(s)	51, 766
TauI	GCSGC	3 cut(s)	92, 277, 747
TfiI	GAWTC	3 cut(s)	32, 378, 497
Tru1I	TTAA	3 cut(s)	222, 902, 926
Tru9I	TTAA	3 cut(s)	222, 902, 926
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	4 cut(s)	341, 533, 731, 772
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	4 cut(s)	75, 179, 212, 306
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	155, 605
VspI	ATTAAT	3 cut(s)	222, 902, 926
XceI	RCATGY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	2 cut(s)	152, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.