pycom03g10640

THO complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
9892256 .. 9892585
330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGCGCTCCTCCCCTTCCCCTCCTACACACCCATCACCCTTTCTCCCTTCTCTATCCACCTTCCCCGTCTGATATCCCCACCCATCTTCCCCGTCCATCGTCGTCACGGTCTTCCTCCTGGTGTGCTCAATGTAGGTCACGGTGTCACGGATCACATTTTCCAAGAAGATCTTGAGCACTCCACAAGTCTAGGAGGAGATCCAAATCTTGTTGAACAGCAAGACAATCGCCCAGATCTCGTCGGCTGGGTTTGCGATGGCATGGGGGGTTGCGGGGGCGTCGGTCATGGAAAGAGAAGGGAGGGAGGGTTGTTTGGGGGTTGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

11.67

Weight (kDa)

6.35

Isoelectric Point (pI)

67.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 159, 194
AcyI GRCGYC 1 cut(s) 279
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 118
Alw21I GWGCWC 2 cut(s) 129, 180
AlwI GGATC 2 cut(s) 159, 194
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 2 cut(s) 129, 180
BccI CCATC 4 cut(s) 41, 92, 105, 251
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 2 cut(s) 169, 235
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 279
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 293, 323
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 129, 180
Bsp1286I GDGCHC 2 cut(s) 129, 180
Bsp143I GATC 4 cut(s) 151, 169, 199, 235
BspACI CCGC 1 cut(s) 273
BspPI GGATC 2 cut(s) 159, 194
BssMI GATC 4 cut(s) 151, 169, 199, 235
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 110, 143
BstACI GRCGYC 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 154, 172, 202, 238
BstMBI GATC 4 cut(s) 151, 169, 199, 235
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 3 cut(s) 169, 199, 235
BstYI RGATCY 3 cut(s) 169, 199, 235
BtgZI GCGATG 1 cut(s) 270
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 268
CviAII CATG 2 cut(s) 262, 287
CviJI RGCY 1 cut(s) 246
CviKI_1 RGCY 1 cut(s) 246
DpnI GATC 4 cut(s) 153, 171, 201, 237
DpnII GATC 4 cut(s) 151, 169, 199, 235
Eco32I GATATC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 75
FaeI CATG 2 cut(s) 265, 290
FaiI YATR 2 cut(s) 263, 288
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 2 cut(s) 261, 286
FauI CCCGC 1 cut(s) 266
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 2 cut(s) 265, 290
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 173
Hpy99I CGWCG 3 cut(s) 105, 245, 284
HpyAV CCTTC 4 cut(s) 25, 58, 71, 291
HpyCH4III ACNGT 2 cut(s) 110, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 2 cut(s) 265, 290
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 151, 169, 199, 235
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 4 cut(s) 105, 132, 232, 246
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 3 cut(s) 104, 137, 145
MalI GATC 4 cut(s) 153, 171, 201, 237
MboI GATC 4 cut(s) 151, 169, 199, 235
MboII GAAGA 3 cut(s) 79, 104, 179
MflI RGATCY 3 cut(s) 169, 199, 235
MhlI GDGCHC 2 cut(s) 129, 180
MnlI CCTC 6 cut(s) 20, 31, 126, 188, 295, 299
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 4 cut(s) 151, 169, 199, 235
NlaIII CATG 2 cut(s) 265, 290
NmuCI GTSAC 3 cut(s) 104, 137, 145
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 1 cut(s) 118
PsuI RGATCY 3 cut(s) 169, 199, 235
Sau3AI GATC 4 cut(s) 151, 169, 199, 235
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 129, 180
SetI ASST 2 cut(s) 63, 139
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SsiI CCGC 1 cut(s) 273
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 110, 143
TaqII GACCGA 1 cut(s) 272
TseFI GTSAC 3 cut(s) 104, 137, 145
Tsp45I GTSAC 3 cut(s) 104, 137, 145
TspGWI ACGGA 1 cut(s) 164
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.