pycom03g11720

Molybdopterin biosynthesis protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
11669263 .. 11669532
270 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGGTTATTGACGTTAGATTGGTATTTAAGTTATCTGATTGTGTGGATGATTTGGTTCCATTCCGTAATTGTCAAGTCTCTGTTGTCACTGTATACATTCAGATCATTAACATGCATGGGAATCCAAATGCGGTTGCTGAGTGTATGGAGGCTCTGTTGCCTGCCCTCAAGCATGGATTGAAGCAGATAAGGGGAGACGAGAGAAAATCATCCCTGACACGTCCCTCACACACAAGGGGCGACCGCGGATGTGTTGGAACAAAGTTATAA

Protein Analysis

90

Amino Acids

9.88

Weight (kDa)

8.84

Isoelectric Point (pI)

21.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 268
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 131, 244, 246
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 1 cut(s) 181
AjiI CACGTC 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 82, 189
BcoDI GTCTC 2 cut(s) 82, 189
BmgBI CACGTC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 3 cut(s) 52, 209, 254
BseMII CTCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 82, 189
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 3 cut(s) 131, 244, 246
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 102
BssNAI GTATAC 1 cut(s) 94
Bst1107I GTATAC 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 3 cut(s) 52, 209, 254
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 82, 189
BstMBI GATC 1 cut(s) 102
BstMCI CGRYCG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 115
BstUI CGCG 1 cut(s) 246
BstZ17I GTATAC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 244
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 3 cut(s) 52, 209, 254
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 162
Cfr42I CCGCGG 1 cut(s) 247
CviAII CATG 3 cut(s) 112, 116, 173
CviJI RGCY 1 cut(s) 152
CviKI_1 RGCY 1 cut(s) 152
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 3 cut(s) 115, 119, 176
FaiI YATR 6 cut(s) 94, 113, 117, 146, 174, 268
FaqI GGGAC 1 cut(s) 207
FatI CATG 3 cut(s) 111, 115, 172
FblI GTMKAC 1 cut(s) 93
FokI GGATG 3 cut(s) 59, 196, 261
Hin1II CATG 3 cut(s) 115, 119, 176
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 37, 102
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 12, 220
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 12, 220
Hsp92II CATG 3 cut(s) 115, 119, 176
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 174, 227
MaeII ACGT 2 cut(s) 12, 220
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MluCI AATT 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 3 cut(s) 142, 176, 235
Mph1103I ATGCAT 1 cut(s) 117
MseI TTAA 2 cut(s) 27, 108
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 246
MvnI CGCG 1 cut(s) 246
NdeII GATC 1 cut(s) 102
NlaIII CATG 3 cut(s) 115, 119, 176
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 117
NspI RCATGY 1 cut(s) 115
PfeI GAWTC 1 cut(s) 121
PsiI TTATAA 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 110
SacII CCGCGG 1 cut(s) 247
SaqAI TTAA 2 cut(s) 27, 108
Sau3AI GATC 1 cut(s) 102
SetI ASST 2 cut(s) 15, 223
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 67
SsiI CCGC 3 cut(s) 131, 244, 246
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 15, 223
TasI AATT 1 cut(s) 67
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 27, 108
Tru9I TTAA 2 cut(s) 27, 108
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 94
XceI RCATGY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.