Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12460232 .. 12461810

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGTCTCATATGCAATTATTACAAACTAGAATGTAGGGGTAGTATTGATGAGGCTGAAGATCCAAGAAGTGCAGCCATCAGGGAAATAAGAGAAGAGACAGGAGTTAAATCAGCAGAAATTCTTGCAGAGGCACCTTATTGGTTAACTTATGATTTCCCGCCAGAAGTTAGGGAAAAACTTCGGCATCAGTGGGGATCAGATTGGAAGGGCCAAGCACAGAAATGGTTTCTTCTTAACTTCACTGGGAAGGATGACGAAATCAATCTTTTAGGCGATGGAAGTGAAAAACCTTGGTTTGGGGAGTGGTCATGGATGTCAACAGAACAAGTAGTTGATCTTACTCTGGATTTTAAGAAGCCTGTTTATAAGGAAGTTCTTGCAGCGTTCACACCTCATCTTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009987 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0019637 GO:0034432 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

136

Amino Acids

15.73

Weight (kDa)

4.79

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	13 - 125	3.3e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	133
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	56, 205
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	11, 92
AlwI	GGATC	2 cut(s)	56, 205
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	74, 383
ApoI	RAATTY	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	86, 395
BccI	CCATC	2 cut(s)	86, 272
BcoDI	GTCTC	2 cut(s)	11, 92
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	75, 384
BlsI	GCNGC	2 cut(s)	76, 385
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	259, 321
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	86, 395
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	11, 92
BsnI	GGCC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	61, 197, 337
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	56, 205
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	3 cut(s)	61, 197, 337
BssT1I	CCWWGG	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	259, 321
BstKTI	GATC	3 cut(s)	64, 200, 340
BstMAI	GTCTC	2 cut(s)	11, 92
BstMBI	GATC	3 cut(s)	61, 197, 337
BstV1I	GCAGC	2 cut(s)	86, 395
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	259, 321
BtsIMutI	CAGTG	2 cut(s)	197, 243
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	1 cut(s)	312
CviJI	RGCY	4 cut(s)	56, 77, 213, 361
CviKI_1	RGCY	4 cut(s)	56, 77, 213, 361
DpnI	GATC	3 cut(s)	63, 199, 339
DpnII	GATC	3 cut(s)	61, 197, 337
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	1 cut(s)	315
FaiI	YATR	5 cut(s)	11, 13, 153, 313, 369
FatI	CATG	1 cut(s)	311
FauI	CCCGC	1 cut(s)	168
FauNDI	CATATG	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	75, 384
FokI	GGATG	2 cut(s)	266, 328
Fsp4HI	GCNGC	2 cut(s)	75, 384
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	75, 384
HaeIII	GGCC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	315
HincII	GTYRAC	2 cut(s)	147, 321
HindII	GTYRAC	2 cut(s)	147, 321
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	147
Hpy166II	GTNNAC	3 cut(s)	147, 321, 390
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	3 cut(s)	147, 321, 390
HpyAV	CCTTC	2 cut(s)	202, 244
HpyCH4V	TGCA	4 cut(s)	15, 74, 128, 383
Hsp92II	CATG	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	61, 197, 337
LpnPI	CCDG	6 cut(s)	67, 87, 177, 231, 332, 375
Lsp1109I	GCAGC	2 cut(s)	86, 395
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	29
MalI	GATC	3 cut(s)	63, 199, 339
MboI	GATC	3 cut(s)	61, 197, 337
MboII	GAAGA	4 cut(s)	71, 107, 224, 392
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	2 cut(s)	16, 120
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	46, 124, 405
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	4 cut(s)	108, 146, 237, 354
MslI	CAYNNNNRTG	1 cut(s)	223
NdeI	CATATG	1 cut(s)	11
NdeII	GATC	3 cut(s)	61, 197, 337
NlaIII	CATG	1 cut(s)	315
NlaIV	GGNNCC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	76, 385
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	108, 146, 237, 354
SatI	GCNGC	2 cut(s)	75, 384
Sau3AI	GATC	3 cut(s)	61, 197, 337
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	13
SetI	ASST	3 cut(s)	139, 295, 397
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	16, 120
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	293
TasI	AATT	2 cut(s)	16, 120
Tru1I	TTAA	4 cut(s)	108, 146, 237, 354
Tru9I	TTAA	4 cut(s)	108, 146, 237, 354
TscAI	CASTG	2 cut(s)	197, 250
TseI	GCWGC	2 cut(s)	74, 383
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	197, 250
XapI	RAATTY	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.