pycom03g12250

Las1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
12667432 .. 12667767
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGAATAGCAAAGAATTGAAGAAGACAGATGCTGATGTCGGAAATACAAACAAATGGGTTCTGCCCAAATCAGGGAACCCGCGTCCGATTGGAATGTTGCCTCGAGCTGTTGGGTTTTCTGGCTGCCTTCCTGTTCTGGATGTCAATAATGTCCCAGAAAAGGTTCCTGGATTACTAGGAAGAAAGGAGAAGTGGGAACTGAAACAATGTAGTGCCATGATACCTATAAAACTCAATTTTGGTCAAAATAGTATGTGCAAGCAGTCGAGAGTAAGTAATGTTTCTTACATTTCAATACACCGAAACATGTTAGAACTTTCTCACCTTTCGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

9.76

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 71, 72, 160
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 19, 294
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 168
BfaI CTAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 77, 165
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 72, 160
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 3 cut(s) 71, 72, 160
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 71, 72, 160
BsmFI GGGAC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 102
BspACI CCGC 1 cut(s) 80
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 77, 165
Bst2UI CCWGG 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 82
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 260
CaiI CAGNNNCTG 1 cut(s) 32
CseI GACGC 1 cut(s) 71
CviAII CATG 2 cut(s) 217, 307
CviJI RGCY 2 cut(s) 107, 123
CviKI_1 RGCY 2 cut(s) 107, 123
Eco88I CYCGRG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 2 cut(s) 220, 310
FaiI YATR 4 cut(s) 218, 227, 254, 308
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 216, 306
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 124
HgaI GACGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 220, 310
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 2 cut(s) 41, 87
Hpy188III TCNNGA 2 cut(s) 137, 267
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 258
Hsp92II CATG 2 cut(s) 220, 310
LpnPI CCDG 7 cut(s) 57, 105, 122, 144, 153, 168, 180
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 176
MboII GAAGA 3 cut(s) 31, 34, 192
MluCI AATT 2 cut(s) 14, 235
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 82
NlaIII CATG 2 cut(s) 220, 310
NlaIV GGNNCC 2 cut(s) 77, 165
NspI RCATGY 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 102
PciI ACATGT 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 1 cut(s) 125
PscI ACATGT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 77, 165
PspXI VCTCGAGB 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 168
SetI ASST 4 cut(s) 109, 165, 226, 327
SfaNI GCATC 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 2 cut(s) 14, 235
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 166
TaqI TCGA 3 cut(s) 103, 266, 329
TasI AATT 2 cut(s) 14, 235
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.