Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13082685 .. 13083884

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATGAGTGGGGGGTAGATGTTGCTTTAACTGGCTCTCAGAAAGCTCTTTCCCTCCCCACTGGAATTGGGATTGTGTGTGCAAGCCCCAAAGCTCTGGAGGCATCTAAAACTGCAAAATCCGTGAGGGTGTTCTTCGACTGGAATGATTACTTGAAGTTCTATAAGTTGGGAACATACTGGCCATACACCCCTTCCATCCAGTTGCTGTATGGGCTGCGTACAGCACTCGATCTTGTTTTTGAGGAAGGACTTGACAATGTGATTGCAAGGCATAGCCGTTTGGGCAAAGCAACAAGGCTTGCTGTGGAGGCATGGGGGTTGAAGAACTGCACCCAAAGCGAGGAATGGGTGAGTGACACAGTGACTGCTGTTCTTGTTCCTCCATACATTGACAGTACCGAAATTGTGAAAAGGGCATGGAAAAGGTACAATTTGAGCTTAGGCCTAGGCCTGAACAAAATAGCCGGCAAGGTTTTCAGAATAGGGCATCTTGGCAACCTGAATGAGTTGCAACTGTTGGGTTGTCTTGCTGGTGTGGAGATGGTGCTTAAGGATGTCGGATACCCTGTTAAGCTCGGAAGCGGAGTTGCAGCTGCCAGTGCATACTTCCAGAACAATACCCCTCTGATCCCTTCCAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

216

Amino Acids

23.57

Weight (kDa)

8.9

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	1 - 105	2e-06	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	1 cut(s)	182
AfaI	GTAC	3 cut(s)	223, 400, 431
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	2 cut(s)	157, 325
AjnI	CCWGG	1 cut(s)	638
AluBI	AGCT	5 cut(s)	47, 95, 441, 577, 596
AluI	AGCT	5 cut(s)	47, 95, 441, 577, 596
AlwI	GGATC	1 cut(s)	625
AlwNI	CAGNNNCTG	2 cut(s)	208, 368
AoxI	GGCC	3 cut(s)	182, 445, 451
ApeKI	GCWGC	3 cut(s)	217, 593, 596
AspA2I	CCTAGG	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	364
AvrII	CCTAGG	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	204, 583, 605
BccI	CCATC	2 cut(s)	206, 538
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	640
BciVI	GTATCC	1 cut(s)	557
BfaI	CTAG	1 cut(s)	449
BfrI	CTTAAG	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	218, 594, 597
BlnI	CCTAGG	1 cut(s)	448
BlsI	GCNGC	3 cut(s)	219, 595, 598
Bme1390I	CCNGG	1 cut(s)	640
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	113, 499
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	6 cut(s)	37, 67, 146, 185, 202, 600
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	3 cut(s)	10, 198, 562
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	6 cut(s)	37, 67, 146, 185, 202, 600
BseXI	GCAGC	3 cut(s)	204, 583, 605
BsgI	GTGCAG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	184, 447, 453
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	3 cut(s)	184, 447, 453
Bsp143I	GATC	2 cut(s)	232, 630
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	3 cut(s)	184, 447, 453
BspCNI	CTCAG	1 cut(s)	52
BspPI	GGATC	1 cut(s)	625
BspTI	CTTAAG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	6 cut(s)	37, 67, 146, 185, 202, 600
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	232, 630
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	3 cut(s)	364, 398, 519
BstAFI	CTTAAG	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	85, 303, 469
BstDEI	CTNAG	2 cut(s)	39, 442
BstF5I	GGATG	3 cut(s)	10, 198, 562
BstKTI	GATC	2 cut(s)	235, 633
BstMBI	GATC	2 cut(s)	232, 630
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 214, 285, 311, 339, 602
BstNI	CCWGG	1 cut(s)	640
BstSCI	CCNGG	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	204, 583, 605
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	184, 447, 453
BtsCI	GGATG	3 cut(s)	10, 198, 562
BtsIMutI	CAGTG	3 cut(s)	60, 369, 607
Cac8I	GCNNGC	3 cut(s)	85, 303, 469
CaiI	CAGNNNCTG	2 cut(s)	208, 368
Cfr10I	RCCGGY	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	222, 399, 430
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	2 cut(s)	315, 420
CviQI	GTAC	3 cut(s)	222, 399, 430
DdeI	CTNAG	2 cut(s)	39, 442
DpnI	GATC	2 cut(s)	234, 632
DpnII	GATC	2 cut(s)	232, 630
EaeI	YGGCCR	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	448
Eco147I	AGGCCT	2 cut(s)	447, 453
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	318, 423
FaiI	YATR	9 cut(s)	165, 178, 187, 213, 276, 316, 388, 421, 607
FatI	CATG	2 cut(s)	314, 419
Fnu4HI	GCNGC	3 cut(s)	218, 594, 597
FokI	GGATG	3 cut(s)	17, 185, 569
Fsp4HI	GCNGC	3 cut(s)	218, 594, 597
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	3 cut(s)	218, 594, 597
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	184, 447, 453
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	2 cut(s)	318, 423
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	5 cut(s)	42, 482, 563, 581, 630
Hpy188III	TCNNGA	2 cut(s)	98, 613
HpyAV	CCTTC	3 cut(s)	204, 242, 645
HpyCH4III	ACNGT	3 cut(s)	364, 398, 519
HpyCH4V	TGCA	7 cut(s)	83, 116, 269, 333, 514, 593, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 214, 285, 311, 339, 602
HpyF3I	CTNAG	2 cut(s)	39, 442
Hsp92II	CATG	2 cut(s)	318, 423
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	232, 630
Lsp1109I	GCAGC	3 cut(s)	204, 583, 605
LweI	GCATC	2 cut(s)	113, 499
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	356, 364
MalI	GATC	2 cut(s)	234, 632
MboI	GATC	2 cut(s)	232, 630
MboII	GAAGA	2 cut(s)	127, 337
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	3 cut(s)	66, 405, 433
MluNI	TGGCCA	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	65, 94, 120, 238, 304, 337, 393, 636
Mox20I	TGGCCA	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	3 cut(s)	29, 552, 573
Msp20I	TGGCCA	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	640
MwoI	GCNNNNNNNGC	6 cut(s)	101, 214, 285, 311, 339, 602
NaeI	GCCGGC	1 cut(s)	469
NdeII	GATC	2 cut(s)	232, 630
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	2 cut(s)	318, 423
NmuCI	GTSAC	2 cut(s)	356, 364
PceI	AGGCCT	2 cut(s)	447, 453
PdiI	GCCGGC	1 cut(s)	469
PfoI	TCCNGGA	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	219, 595, 598
Psp6I	CCWGG	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	638
PstNI	CAGNNNCTG	2 cut(s)	208, 368
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	3 cut(s)	223, 400, 431
RsaNI	GTAC	3 cut(s)	222, 399, 430
SaqAI	TTAA	3 cut(s)	29, 552, 573
SatI	GCNGC	3 cut(s)	218, 594, 597
Sau3AI	GATC	2 cut(s)	232, 630
ScrFI	CCNGG	1 cut(s)	640
SetI	ASST	8 cut(s)	49, 97, 431, 443, 477, 504, 579, 598
SfaNI	GCATC	2 cut(s)	113, 499
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	3 cut(s)	66, 405, 433
SseBI	AGGCCT	2 cut(s)	447, 453
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	1 cut(s)	449
StuI	AGGCCT	2 cut(s)	447, 453
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	364, 398, 519
TaqI	TCGA	2 cut(s)	138, 231
TasI	AATT	3 cut(s)	66, 405, 433
Tru1I	TTAA	3 cut(s)	29, 552, 573
Tru9I	TTAA	3 cut(s)	29, 552, 573
TscAI	CASTG	3 cut(s)	67, 369, 607
TseFI	GTSAC	2 cut(s)	356, 364
TseI	GCWGC	3 cut(s)	217, 593, 596
Tsp45I	GTSAC	2 cut(s)	356, 364
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	3 cut(s)	67, 369, 607
Vha464I	CTTAAG	1 cut(s)	551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	448
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.