Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13258294 .. 13258757

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTATCCCTCAAGCTCATCCTTCTTGCTCCAAAAGCCCATAGGCCCAGGACCAAGCACGACAGGCCTGACCCGCTACTGCTCCACCTCGGGCTCCCTCCTAAACTCAGCTGTCAATTCCGTTATCGAAACCGCAGCTGACTTCGACTTCTCATCCCTCCGATCGCACTCCAAGTCAACTTTTAAAGTGAACTCATCCAACGACGGCTATAGGGACGCCAGCGCCACCAAGCCATTGCTTCGATCGTACGACCTGAATGAGATTGGATCTTCTAATTCTTCTTCTGGTTCGTCATCGTCGGTGGCTCTGGTTTGCCAGCGAAGCTCACCAGCTAGCTTCCCCAGCCATCTCACATATTCTCAGATTTCTTGCCTTTGGATGGCTTCCCCATTTTCTAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

135

Amino Acids

14.23

Weight (kDa)

8.86

Isoelectric Point (pI)

69.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	73, 132
AclWI	GGATC	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	6 cut(s)	15, 110, 137, 324, 332, 336
AluI	AGCT	6 cut(s)	15, 110, 137, 324, 332, 336
AlwI	GGATC	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	2 cut(s)	43, 64
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	44, 50
AsuHPI	GGTGA	1 cut(s)	318
AsuNHI	GCTAGC	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	2 cut(s)	354, 373
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	208
BfoI	RGCGCY	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	44, 50
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	48
BmtI	GCTAGC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	46, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	46, 87
BseGI	GGATG	4 cut(s)	17, 152, 194, 384
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	120, 374
BseXI	GCAGC	1 cut(s)	146
BseYI	CCCAGC	1 cut(s)	341
Bsh1285I	CGRYCG	2 cut(s)	164, 245
BshFI	GGCC	2 cut(s)	45, 66
BsiEI	CGRYCG	2 cut(s)	164, 245
BsiHKCI	CYCGRG	1 cut(s)	88
BsiWI	CGTACG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	45, 66
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	161, 242, 266
BspACI	CCGC	2 cut(s)	73, 132
BspANI	GGCC	2 cut(s)	45, 66
BspCNI	CTCAG	2 cut(s)	119, 373
BspLI	GGNNCC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	46, 87
BssMI	GATC	3 cut(s)	161, 242, 266
BssNI	GRCGYC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	220, 317, 334
BstDEI	CTNAG	2 cut(s)	106, 360
BstF5I	GGATG	4 cut(s)	17, 152, 194, 384
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	164, 245, 269
BstMBI	GATC	3 cut(s)	161, 242, 266
BstMCI	CGRYCG	2 cut(s)	164, 245
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 63, 72, 321, 342
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	45, 66
BtsCI	GGATG	4 cut(s)	17, 152, 194, 384
Cac8I	GCNNGC	3 cut(s)	220, 317, 334
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	44, 50
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	247
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	106, 360
DpnI	GATC	3 cut(s)	163, 244, 268
DpnII	GATC	3 cut(s)	161, 242, 266
DraI	TTTAAA	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	95
FaiI	YATR	3 cut(s)	41, 210, 355
FaqI	GGGAC	1 cut(s)	227
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	4 cut(s)	4, 139, 181, 391
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	45, 66
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	2 cut(s)	177, 190
Hpy188I	TCNGA	2 cut(s)	161, 363
Hpy8I	GTNNAC	2 cut(s)	177, 190
Hpy99I	CGWCG	2 cut(s)	206, 301
HpyAV	CCTTC	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 63, 72, 321, 342
HpyF3I	CTNAG	2 cut(s)	106, 360
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	161, 242, 266
LmnI	GCTCC	3 cut(s)	33, 86, 98
Lsp1109I	GCAGC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	333
MalI	GATC	3 cut(s)	163, 244, 268
MboI	GATC	3 cut(s)	161, 242, 266
MboII	GAAGA	3 cut(s)	261, 270, 273
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	2 cut(s)	115, 274
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	4 cut(s)	19, 97, 107, 167
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	2 cut(s)	110, 137
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	5 cut(s)	34, 63, 72, 321, 342
NdeII	GATC	3 cut(s)	161, 242, 266
NheI	GCTAGC	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	66
Pfl23II	CGTACG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	2 cut(s)	164, 245
Psp6I	CCWGG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	46
PspLI	CGTACG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	44, 50
PsuI	RGATCY	1 cut(s)	266
PvuI	CGATCG	2 cut(s)	164, 245
PvuII	CAGCTG	2 cut(s)	110, 137
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	161, 242, 266
Sau96I	GGNCC	2 cut(s)	44, 50
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	8 cut(s)	17, 89, 112, 139, 255, 326, 334, 338
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	115, 274
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	73, 132
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	3 cut(s)	126, 144, 241
TasI	AATT	2 cut(s)	115, 274
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	50
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.