pycom03g13030

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
13930547 .. 13930945
399 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGAAGGGTGTTTGTTTTTGTGTTCTTTTTTACTGTAGTTTAATTTCTTCATGGGATTGGCTTAGTTATTCCTTTTGTTGGAGAGTTCCTGTGAAGAAAATATATCAAGGGGCAGATGCGGGCTACAGGGAAAGCTGCCCTTTTGTAATCATTAAGCTACTGCGTTACGTTGCAAGTATGGGTGAGCATTCTTTTGTTACTTTTGGGTACGAGGAAGCATTGATTGGAATGGAAGGCAGATTTAAGGCAAAGTTGTATTGA

Protein Analysis

87

Amino Acids

9.99

Weight (kDa)

8.63

Isoelectric Point (pI)

24.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 119
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 2 cut(s) 135, 157
AluI AGCT 2 cut(s) 135, 157
ApeKI GCWGC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 194
BbvI GCAGC 1 cut(s) 122
BfmI CTRYAG 2 cut(s) 34, 124
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmsI GCATC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 78
BsmI GAATGC 1 cut(s) 187
BspACI CCGC 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 62
BstSFI CTRYAG 2 cut(s) 34, 124
BstV1I GCAGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 51
CviJI RGCY 4 cut(s) 61, 123, 135, 157
CviKI_1 RGCY 4 cut(s) 61, 123, 135, 157
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 62
FaeI CATG 1 cut(s) 54
FaiI YATR 3 cut(s) 52, 103, 179
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FatI CATG 1 cut(s) 50
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 54
HphI GGTGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 54
LpnPI CCDG 2 cut(s) 102, 112
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 106
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 164, 196
MboII GAAGA 2 cut(s) 39, 106
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 1 cut(s) 205
MseI TTAA 3 cut(s) 41, 153, 243
Mva1269I GAATGC 1 cut(s) 187
NlaIII CATG 1 cut(s) 54
PctI GAATGC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 137
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 3 cut(s) 41, 153, 243
SatI GCNGC 1 cut(s) 136
SetI ASST 3 cut(s) 137, 159, 171
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 34, 124
SgeI CNNG 7 cut(s) 63, 101, 119, 132, 139, 186, 223
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 119
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 171
TasI AATT 1 cut(s) 42
Tru1I TTAA 3 cut(s) 41, 153, 243
Tru9I TTAA 3 cut(s) 41, 153, 243
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 17, 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.