pycom03g13420

1-acyl-sn-glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
14435011 .. 14435482
472 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGGTGCAGGCAAGTTTAAAGAGGTTAAGGGATTTTACAATGCCTTTTTGGCTTACCATTTTTGCGGAAGGAACACGCATGAGTCCAGACAAGCTTTCTGCAGCTCGAGAGTTTGCTGCTTCTAGAAAATTGCCTATCCCTAGAAATGTCATGATTCCTCGGACTAAGGGTTTTGTTACAGCAGTAAAAAATTTGCGCTCGTTTGTCCCTGCAATCTATGATGTTACCCTCGCTGTTCCAGAAGGATATTCTACTCCTTCACTATATATGCTTATGGAGAGGCAACATACAGTGGTAAACCATGGAGTTCCAATAAGTTTTAAATCCACTACAAATTATTTACGGTTTTTTTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.57

Weight (kDa)

10.52

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 190
AluBI AGCT 2 cut(s) 94, 104
AluI AGCT 2 cut(s) 94, 104
Ama87I CYCGRG 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 101, 116
ApoI RAATTY 1 cut(s) 190
AspLEI GCGC 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 105
BbvI GCAGC 2 cut(s) 103, 113
BfaI CTAG 2 cut(s) 123, 141
BfmI CTRYAG 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 2 cut(s) 102, 117
BlsI GCNGC 2 cut(s) 103, 118
BmeT110I CYCGRG 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 158, 301
BseDI CCNNGG 2 cut(s) 158, 301
BseXI GCAGC 2 cut(s) 103, 113
BsgI GTGCAG 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 1 cut(s) 65
BspHI TCATGA 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 158, 301
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 292, 345
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 103, 113
BtgI CCRYGG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 9
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 198
CviAII CATG 3 cut(s) 79, 151, 302
CviJI RGCY 3 cut(s) 52, 94, 104
CviKI_1 RGCY 3 cut(s) 52, 94, 104
DdeI CTNAG 1 cut(s) 165
DraI TTTAAA 2 cut(s) 18, 322
Eco130I CCWWGG 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 3 cut(s) 82, 154, 305
FaiI YATR 9 cut(s) 80, 152, 219, 265, 267, 269, 275, 288, 303
FaqI GGGAC 1 cut(s) 191
FatI CATG 3 cut(s) 78, 150, 301
Fnu4HI GCNGC 2 cut(s) 102, 117
Fsp4HI GCNGC 2 cut(s) 102, 117
FspBI CTAG 2 cut(s) 123, 141
GlaI GCGC 1 cut(s) 197
GluI GCNGC 2 cut(s) 102, 117
HhaI GCGC 1 cut(s) 198
Hin1II CATG 3 cut(s) 82, 154, 305
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 82, 154
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 5 cut(s) 86, 107, 123, 151, 239
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 3 cut(s) 62, 236, 267
HpyCH4III ACNGT 2 cut(s) 292, 345
HpyCH4V TGCA 3 cut(s) 7, 101, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 3 cut(s) 82, 154, 305
HspAI GCGC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 99, 222, 252
Lsp1109I GCAGC 2 cut(s) 103, 113
MaeI CTAG 2 cut(s) 123, 141
MaeIII GTNAC 2 cut(s) 175, 223
MluCI AATT 4 cut(s) 128, 190, 334, 355
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 4 cut(s) 15, 168, 239, 273
MseI TTAA 3 cut(s) 17, 26, 321
MwoI GCNNNNNNNGC 1 cut(s) 49
NcoI CCATGG 1 cut(s) 301
NlaIII CATG 3 cut(s) 82, 154, 305
PaeR7I CTCGAG 1 cut(s) 105
PagI TCATGA 1 cut(s) 150
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 2 cut(s) 103, 118
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 103
SaqAI TTAA 3 cut(s) 17, 26, 321
SatI GCNGC 2 cut(s) 102, 117
SchI GAGTC 1 cut(s) 91
SetI ASST 3 cut(s) 26, 96, 106
SfcI CTRYAG 1 cut(s) 99
Sfr274I CTCGAG 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 128, 190, 334, 355
SsiI CCGC 1 cut(s) 65
SspMI CTAG 2 cut(s) 123, 141
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 292, 345
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 128, 190, 334, 355
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 3 cut(s) 17, 26, 321
Tru9I TTAA 3 cut(s) 17, 26, 321
TscAI CASTG 1 cut(s) 297
TseI GCWGC 2 cut(s) 101, 116
TspRI CASTG 1 cut(s) 297
XapI RAATTY 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 105
XspI CTAG 2 cut(s) 123, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.