pycom03g13430

Xanthine dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
14442601 .. 14446189
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1389 bp
ATGCTGGCAGAAAACTTTTTCCTGGGTTACCGAAAGGTGGATCTGGCAAGTGGTGAAATTTTACTCCCTGTATTTTTACCTTGGACTAGGTCTTTCGAGTATGTGAAAGAGTATAAGCAAGCTCACAGAAGGGACGATGATATTTCAATTGTGAATGCTGGGATTTGTGTTCATCTTGAGGACAGAGGTGGCTGGGTTGTGTCTGATGCATCCATTGTTTATGGTGGAGTTGCTCCAGTCTCTCTTGCTGCAACAAGAACGAAAGATTTTCTCATTGGAAAGAGTTGGAACCAGGAGATGTTGCAGGGTGCCTTGAAAGTCCTGCAAAAAGATGTATTGCTCAAGGATGACGCTCCTGGTAGGATGGTGGAGTTTCGTAAATCTTTGAGCGTTAGCTTTTTCTTCAAATTTTTTCTTTTGGTTTCTCATCAAATGGAAGGGAAACAATGCATTAAAGAGAGTGTACCGTTATCTCATCTTTCTGCTGTACAATCATTTCACTGGCCACCTGTTATAGGATCTCAAGACTATGAAGTTATAAAACGTGGGACAGCTGTTGGGTCTCCCGAGGTTCATTTATCAGCAAGACTTCAGGTTACAGGAGAGGCAGAATATGCTGATGACACACCATTGTCTCCTAATGGTTTACACGCTGCTTTAATACTCAGCAGAGAGCCTCATGCTTGTATACTTTCAATCGATGATTCTGGAGCAAAGTTATCATCTGGGTTTGCAGGCTTATATTTAGCAAAGGACGGTCCAGCTGATAATAACATTGGACCAATTATTGAAGACGAGGAACTATTTGCTTCGGAATTTGTCAGTCAGGTTATAGGAGTGGTAGTTGCTGATACACATGAAAATGCAAAATTAGCAGCAAGGAAGGTTCATGTTGAGTATGAAGAGCTCCCAGCCATCGTATCAATACAGGATGCCATCGAAGCCAAAAGTTTCCATCCTGATACGGAGAGGTATTTAAGGAAAGGGGATGTGGACCTCTGCTTTCAATCAAGTCAATGTGACAACGTCATAGAGGGGGAAGTTCGAGTAGGCGGACAGGAGCACCTCTATGTGGAGCCAAATAACAGTGTGGTATGGACAATGGATGGTGGCAATGAAGTTCATATGGTCTCATCCACTCAGGCCCCTCAGAAGCACCAGAAATACGTTGTTCATGTTCTTGGTCTTCCAATGTTGAAAGTTGTTTGTAAAACTAAGCGCATTGGTGGTGGTTTTGGTGGCAAGGAGACCAGGTCAGCTGTCGTTGCTGCTGCAGCCGCTGTTCCATCATATCTGTTAAATCATCCAGTTAAAATTACATTAGACCATGATACAGACATGATGATAACTGGCCAACGTCATAGCTTTCTTGGAAAGTACAAGGTATGA

Protein Analysis

463

Amino Acids

50.8

Weight (kDa)

5.84

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CO_deh_flav_C PF03450 37 - 139 1.4e-28 CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C PF01315 200 - 304 3.7e-21 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1 PF02738 320 - 462 9.4e-41 Molybdopterin cofactor-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 688
AciI CCGC 2 cut(s) 1053, 1278
AclWI GGATC 2 cut(s) 48, 526
AcoI YGGCCR 2 cut(s) 503, 1351
AcsI RAATTY 3 cut(s) 57, 407, 815
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 3 cut(s) 465, 489, 1379
AfiI CCNNNNNNNGG 3 cut(s) 37, 515, 1072
AgsI TTSAA 7 cut(s) 147, 316, 406, 696, 791, 1007, 1198
AjnI CCWGG 4 cut(s) 21, 291, 355, 1250
AluBI AGCT 7 cut(s) 122, 396, 554, 764, 907, 1259, 1365
AluI AGCT 7 cut(s) 122, 396, 554, 764, 907, 1259, 1365
Alw21I GWGCWC 2 cut(s) 909, 1065
Alw26I GTCTC 5 cut(s) 244, 567, 639, 1135, 1241
AlwI GGATC 2 cut(s) 48, 526
AlwNI CAGNNNCTG 1 cut(s) 1280
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 3 cut(s) 503, 1143, 1351
ApeKI GCWGC 6 cut(s) 248, 653, 875, 1268, 1271, 1274
ApoI RAATTY 3 cut(s) 57, 407, 815
AspLEI GCGC 1 cut(s) 1221
AspS9I GGNCC 4 cut(s) 758, 779, 994, 1144
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 3 cut(s) 758, 779, 994
BalI TGGCCA 2 cut(s) 505, 1353
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 909
BbsI GAAGAC 2 cut(s) 798, 1178
Bbv12I GWGCWC 2 cut(s) 909, 1065
BbvI GCAGC 6 cut(s) 235, 640, 887, 1255, 1258, 1286
BccI CCATC 6 cut(s) 358, 923, 944, 963, 1100, 1294
BciT130I CCWGG 4 cut(s) 23, 293, 357, 1252
BcoDI GTCTC 5 cut(s) 244, 567, 639, 1135, 1241
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 1272
BisI GCNGC 7 cut(s) 249, 654, 876, 1269, 1272, 1275, 1278
BlsI GCNGC 7 cut(s) 250, 655, 877, 1270, 1273, 1276, 1279
Bme1390I CCNGG 4 cut(s) 23, 293, 357, 1252
Bme18I GGWCC 3 cut(s) 758, 779, 994
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 4 cut(s) 758, 779, 994, 1144
BmiI GGNNCC 4 cut(s) 290, 310, 1077, 1146
BmrFI CCNGG 4 cut(s) 23, 293, 357, 1252
BmsI GCATC 3 cut(s) 196, 218, 922
BpiI GAAGAC 2 cut(s) 798, 1178
BpmI CTGGAG 2 cut(s) 219, 729
BpuEI CTTGAG 3 cut(s) 197, 326, 507
Bsa29I ATCGAT 1 cut(s) 699
BsaI GGTCTC 3 cut(s) 567, 1135, 1241
BsaJI CCNNGG 3 cut(s) 22, 80, 567
BsaXI ACNNNNNCTCC 4 cut(s) 828, 858, 1238, 1268
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 515, 1072
Bse1I ACTGG 4 cut(s) 236, 506, 1307, 1354
Bse3DI GCAATG 1 cut(s) 1120
BseBI CCWGG 4 cut(s) 23, 293, 357, 1252
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 3 cut(s) 22, 80, 567
BseGI GGATG 9 cut(s) 209, 352, 369, 937, 955, 994, 1111, 1133, 1303
BseLI CCNNNNNNNGG 3 cut(s) 37, 515, 1072
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 3 cut(s) 679, 1154, 1163
BseNI ACTGG 4 cut(s) 236, 506, 1307, 1354
BseXI GCAGC 6 cut(s) 235, 640, 887, 1255, 1258, 1286
BseYI CCCAGC 3 cut(s) 158, 192, 910
BshFI GGCC 3 cut(s) 505, 1145, 1353
BshNI GGYRCC 1 cut(s) 308
BshVI ATCGAT 1 cut(s) 699
BsiHKAI GWGCWC 2 cut(s) 909, 1065
BsiHKCI CYCGRG 1 cut(s) 566
BslFI GGGAC 2 cut(s) 146, 562
BslI CCNNNNNNNGG 3 cut(s) 37, 515, 1072
BsmAI GTCTC 5 cut(s) 244, 567, 639, 1135, 1241
BsmFI GGGAC 2 cut(s) 146, 562
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 3 cut(s) 505, 1145, 1353
Bso31I GGTCTC 3 cut(s) 567, 1135, 1241
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 909, 1065
Bsp1407I TGTACA 1 cut(s) 487
Bsp143I GATC 2 cut(s) 40, 518
BspACI CCGC 2 cut(s) 1053, 1278
BspANI GGCC 3 cut(s) 505, 1145, 1353
BspCNI CTCAG 3 cut(s) 678, 1153, 1162
BspDI ATCGAT 1 cut(s) 699
BspLI GGNNCC 4 cut(s) 290, 310, 1077, 1146
BspMAI CTGCAG 1 cut(s) 1276
BspPI GGATC 2 cut(s) 48, 526
BspQI GCTCTTC 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 3 cut(s) 567, 1135, 1241
BsrDI GCAATG 1 cut(s) 1120
BsrGI TGTACA 1 cut(s) 487
BsrI ACTGG 4 cut(s) 236, 506, 1307, 1354
BssECI CCNNGG 3 cut(s) 22, 80, 567
BssMI GATC 2 cut(s) 40, 518
BssNAI GTATAC 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 80
Bst1107I GTATAC 1 cut(s) 689
Bst2UI CCWGG 4 cut(s) 23, 293, 357, 1252
Bst4CI ACNGT 3 cut(s) 468, 758, 1088
Bst6I CTCTTC 1 cut(s) 897
BstAPI GCANNNNNTGC 1 cut(s) 614
BstAUI TGTACA 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 6, 120, 736
BstDEI CTNAG 4 cut(s) 665, 1140, 1149, 1215
BstEII GGTNACC 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 9 cut(s) 209, 352, 369, 937, 955, 994, 1111, 1133, 1303
BstHHI GCGC 1 cut(s) 1221
BstKTI GATC 2 cut(s) 43, 521
BstMAI GTCTC 5 cut(s) 244, 567, 639, 1135, 1241
BstMBI GATC 2 cut(s) 40, 518
BstMWI GCNNNNNNNGC 6 cut(s) 614, 872, 941, 1265, 1274, 1277
BstNI CCWGG 4 cut(s) 23, 293, 357, 1252
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 4 cut(s) 21, 291, 355, 1250
BstSFI CTRYAG 1 cut(s) 1272
BstV1I GCAGC 6 cut(s) 235, 640, 887, 1255, 1258, 1286
BstV2I GAAGAC 2 cut(s) 798, 1178
BstX2I RGATCY 2 cut(s) 40, 518
BstYI RGATCY 2 cut(s) 40, 518
BstZ17I GTATAC 1 cut(s) 689
Bsu15I ATCGAT 1 cut(s) 699
BsuRI GGCC 3 cut(s) 505, 1145, 1353
BsuTUI ATCGAT 1 cut(s) 699
BtsCI GGATG 9 cut(s) 209, 352, 369, 937, 955, 994, 1111, 1133, 1303
BtsIMutI CAGTG 2 cut(s) 499, 1093
Cac8I GCNNGC 3 cut(s) 6, 120, 736
CaiI CAGNNNCTG 1 cut(s) 1280
CfoI GCGC 1 cut(s) 1221
Cfr13I GGNCC 4 cut(s) 758, 779, 994, 1144
ClaI ATCGAT 1 cut(s) 699
CseI GACGC 1 cut(s) 359
CsiI ACCWGGT 1 cut(s) 1250
Csp6I GTAC 3 cut(s) 464, 488, 1378
CviAII CATG 6 cut(s) 680, 857, 890, 1175, 1328, 1339
CviQI GTAC 3 cut(s) 464, 488, 1378
DdeI CTNAG 4 cut(s) 665, 1140, 1149, 1215
DpnI GATC 2 cut(s) 42, 520
DpnII GATC 2 cut(s) 40, 518
EaeI YGGCCR 2 cut(s) 503, 1351
Eam1104I CTCTTC 1 cut(s) 897
EarI CTCTTC 1 cut(s) 897
EciI GGCGGA 1 cut(s) 1068
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 909
Eco31I GGTCTC 3 cut(s) 567, 1135, 1241
Eco47I GGWCC 3 cut(s) 758, 779, 994
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 907
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 1144
EcoO65I GGTNACC 1 cut(s) 26
EcoRII CCWGG 4 cut(s) 21, 291, 355, 1250
EcoT14I CCWWGG 1 cut(s) 80
EcoT22I ATGCAT 2 cut(s) 211, 452
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 6 cut(s) 683, 860, 893, 1178, 1331, 1342
FaqI GGGAC 2 cut(s) 146, 562
FatI CATG 6 cut(s) 679, 856, 889, 1174, 1327, 1338
FauNDI CATATG 1 cut(s) 1125
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 7 cut(s) 249, 654, 876, 1269, 1272, 1275, 1278
FokI GGATG 9 cut(s) 196, 359, 376, 942, 944, 1001, 1118, 1120, 1290
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 7 cut(s) 249, 654, 876, 1269, 1272, 1275, 1278
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 1220
GluI GCNGC 7 cut(s) 249, 654, 876, 1269, 1272, 1275, 1278
GsaI CCCAGC 3 cut(s) 162, 196, 914
GsuI CTGGAG 2 cut(s) 219, 729
HaeIII GGCC 3 cut(s) 505, 1145, 1353
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 1221
Hin1II CATG 6 cut(s) 683, 860, 893, 1178, 1331, 1342
Hin6I GCGC 1 cut(s) 1219
HinP1I GCGC 1 cut(s) 1219
HinfI GANTC 1 cut(s) 704
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 4 cut(s) 464, 647, 689, 994
Hpy188I TCNGA 3 cut(s) 205, 814, 1152
Hpy188III TCNNGA 5 cut(s) 176, 524, 566, 708, 959
Hpy8I GTNNAC 4 cut(s) 464, 647, 689, 994
HpyAV CCTTC 3 cut(s) 123, 431, 877
HpyCH4III ACNGT 3 cut(s) 468, 758, 1088
HpyCH4IV ACGT 4 cut(s) 544, 1026, 1167, 1357
HpyCH4V TGCA 8 cut(s) 209, 251, 304, 325, 450, 734, 866, 1274
HpyF10VI GCNNNNNNNGC 6 cut(s) 614, 872, 941, 1265, 1274, 1277
HpyF3I CTNAG 4 cut(s) 665, 1140, 1149, 1215
HpySE526I ACGT 4 cut(s) 544, 1026, 1167, 1357
Hsp92II CATG 6 cut(s) 683, 860, 893, 1178, 1331, 1342
HspAI GCGC 1 cut(s) 1219
Kzo9I GATC 2 cut(s) 40, 518
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 6 cut(s) 238, 358, 710, 912, 1060, 1075
Lsp1109I GCAGC 6 cut(s) 235, 640, 887, 1255, 1258, 1286
LweI GCATC 3 cut(s) 196, 218, 922
MabI ACCWGGT 1 cut(s) 1250
MaeI CTAG 1 cut(s) 87
MaeII ACGT 4 cut(s) 544, 1026, 1167, 1357
MaeIII GTNAC 3 cut(s) 26, 595, 1019
MalI GATC 2 cut(s) 42, 520
MboI GATC 2 cut(s) 40, 518
MboII GAAGA 4 cut(s) 394, 803, 914, 1178
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 2 cut(s) 40, 518
MhlI GDGCHC 2 cut(s) 909, 1065
MlsI TGGCCA 2 cut(s) 505, 1353
MluCI AATT 7 cut(s) 57, 147, 407, 783, 815, 869, 1314
MluNI TGGCCA 2 cut(s) 505, 1353
MmeI TCCRAC 1 cut(s) 266
Mox20I TGGCCA 2 cut(s) 505, 1353
Mph1103I ATGCAT 2 cut(s) 211, 452
MscI TGGCCA 2 cut(s) 505, 1353
MseI TTAA 5 cut(s) 453, 659, 977, 1298, 1311
MslI CAYNNNNRTG 2 cut(s) 861, 1068
Msp20I TGGCCA 2 cut(s) 505, 1353
MspA1I CMGCKG 4 cut(s) 554, 764, 1259, 1280
MspR9I CCNGG 4 cut(s) 23, 293, 357, 1252
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 4 cut(s) 23, 293, 357, 1252
MwoI GCNNNNNNNGC 6 cut(s) 614, 872, 941, 1265, 1274, 1277
NdeI CATATG 1 cut(s) 1125
NdeII GATC 2 cut(s) 40, 518
NlaIII CATG 6 cut(s) 683, 860, 893, 1178, 1331, 1342
NlaIV GGNNCC 4 cut(s) 290, 310, 1077, 1146
NmuCI GTSAC 1 cut(s) 1019
NsiI ATGCAT 2 cut(s) 211, 452
PciSI GCTCTTC 1 cut(s) 897
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 704
PflFI GACNNNGTC 3 cut(s) 88, 1025, 1252
PkrI GCNGC 7 cut(s) 250, 655, 877, 1270, 1273, 1276, 1279
PsiI TTATAA 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 4 cut(s) 21, 291, 355, 1250
PspEI GGTNACC 1 cut(s) 26
PspFI CCCAGC 3 cut(s) 158, 192, 910
PspGI CCWGG 4 cut(s) 21, 291, 355, 1250
PspN4I GGNNCC 4 cut(s) 290, 310, 1077, 1146
PspPI GGNCC 4 cut(s) 758, 779, 994, 1144
PstI CTGCAG 1 cut(s) 1276
PstNI CAGNNNCTG 1 cut(s) 1280
PsuI RGATCY 2 cut(s) 40, 518
PsyI GACNNNGTC 3 cut(s) 88, 1025, 1252
PvuII CAGCTG 3 cut(s) 554, 764, 1259
RsaI GTAC 3 cut(s) 465, 489, 1379
RsaNI GTAC 3 cut(s) 464, 488, 1378
RseI CAYNNNNRTG 2 cut(s) 861, 1068
SacI GAGCTC 1 cut(s) 909
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 5 cut(s) 453, 659, 977, 1298, 1311
SatI GCNGC 7 cut(s) 249, 654, 876, 1269, 1272, 1275, 1278
Sau3AI GATC 2 cut(s) 40, 518
Sau96I GGNCC 4 cut(s) 758, 779, 994, 1144
ScrFI CCNGG 4 cut(s) 23, 293, 357, 1252
SduI GDGCHC 2 cut(s) 909, 1065
SexAI ACCWGGT 1 cut(s) 1250
SfaNI GCATC 3 cut(s) 196, 218, 922
SfcI CTRYAG 1 cut(s) 1272
SinI GGWCC 3 cut(s) 758, 779, 994
SmiMI CAYNNNNRTG 2 cut(s) 861, 1068
SmlI CTYRAG 3 cut(s) 176, 341, 522
SmoI CTYRAG 3 cut(s) 176, 341, 522
Sse9I AATT 7 cut(s) 57, 147, 407, 783, 815, 869, 1314
SsiI CCGC 2 cut(s) 1053, 1278
SspMI CTAG 1 cut(s) 87
SstI GAGCTC 1 cut(s) 909
StyD4I CCNGG 4 cut(s) 21, 291, 355, 1250
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 3 cut(s) 468, 758, 1088
TaiI ACGT 4 cut(s) 547, 1029, 1170, 1360
TaqI TCGA 4 cut(s) 96, 699, 939, 1045
TasI AATT 7 cut(s) 57, 147, 407, 783, 815, 869, 1314
TatI WGTACW 2 cut(s) 487, 1377
TauI GCSGC 1 cut(s) 1280
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 5 cut(s) 453, 659, 977, 1298, 1311
Tru9I TTAA 5 cut(s) 453, 659, 977, 1298, 1311
TscAI CASTG 2 cut(s) 506, 1093
TseFI GTSAC 1 cut(s) 1019
TseI GCWGC 6 cut(s) 248, 653, 875, 1268, 1271, 1274
Tsp45I GTSAC 1 cut(s) 1019
TspDTI ATGAA 9 cut(s) 161, 546, 563, 873, 878, 915, 1112, 1131, 1163
TspGWI ACGGA 1 cut(s) 980
TspRI CASTG 2 cut(s) 506, 1093
Tth111I GACNNNGTC 3 cut(s) 88, 1025, 1252
VpaK11BI GGWCC 3 cut(s) 758, 779, 994
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 3 cut(s) 57, 407, 815
XmiI GTMKAC 1 cut(s) 688
XspI CTAG 1 cut(s) 87
Zsp2I ATGCAT 2 cut(s) 211, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.