pycom03g13440

Xanthine dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
14449613 .. 14449913
301 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGGAGATCGAATTTACTTGGCCGCCCAACCCACCATTTTTCTTGGCATCAGCCGTCATTTTCGCCATCAAGGACACCATTATAGCTGCAAGAGCAGAAGTAGGGTCTAATGACTGGTTTCCACTTGATAATCCCGCGACACCTGAACGGATACATATGGCTTGCTTAGATGAAATTATAGAACCATTTGTAAGCACAGATTTCCACGCCAAGCTTAGCGTTTGA

Protein Analysis

75

Amino Acids

8.3

Weight (kDa)

4.37

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 23, 135
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 1 cut(s) 11
AluBI AGCT 2 cut(s) 86, 214
AluI AGCT 2 cut(s) 86, 214
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 11
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 38
BciVI GTATCC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 2 cut(s) 23, 87
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 2 cut(s) 24, 88
BmsI GCATC 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 22
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 6
Bsp1720I GCTNAGC 1 cut(s) 215
BspACI CCGC 2 cut(s) 23, 135
BspANI GGCC 1 cut(s) 22
BspFNI CGCG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 119
BssMI GATC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 166, 215
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 73
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 163
CviJI RGCY 5 cut(s) 22, 53, 86, 161, 214
CviKI_1 RGCY 5 cut(s) 22, 53, 86, 161, 214
DdeI CTNAG 2 cut(s) 166, 215
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 20
FaiI YATR 4 cut(s) 83, 156, 158, 179
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 23, 87
Fsp4HI GCNGC 2 cut(s) 23, 87
GluI GCNGC 2 cut(s) 23, 87
HaeIII GGCC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 166, 215
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 2 cut(s) 100, 156
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 56
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MluCI AATT 2 cut(s) 11, 174
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeI CATATG 1 cut(s) 156
NdeII GATC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 24, 88
SatI GCNGC 2 cut(s) 23, 87
Sau3AI GATC 1 cut(s) 6
SetI ASST 3 cut(s) 88, 145, 216
SfaNI GCATC 1 cut(s) 56
Sse9I AATT 2 cut(s) 11, 174
SsiI CCGC 2 cut(s) 23, 135
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 11, 174
TauI GCSGC 1 cut(s) 25
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 163
XapI RAATTY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.