Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15494700 .. 15495463

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGACTCGACCGCACTCGACCACCCATCGGGACCCTCCGATGACGTCGATCCGGGTCTAACCGATTTCCAACCCAGCTCCGAGCCGGCCTTTTACTCTTCTGCTGCTGCTTCCGGTGGGGCCAAGTACAAGCTCATGTCCCCGGCCAAGCTTCCGATCTCGAGGTCCCCGTGCCTCACTATCCCTCCCGGCCTCAGTCCGACGTCGTTTCTCGAGTCCCCCGTCCTCCTCTCCAACATGAAGCGTAAGCTAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

87

Amino Acids

9.09

Weight (kDa)

7.89

Isoelectric Point (pI)

88.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	48, 206
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	144
AcyI	GRCGYC	2 cut(s)	45, 203
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	78, 133, 151, 250
AluI	AGCT	4 cut(s)	78, 133, 151, 250
AlwI	GGATC	1 cut(s)	44
Ama87I	CYCGRG	2 cut(s)	160, 212
AoxI	GGCC	4 cut(s)	87, 120, 144, 190
ApeKI	GCWGC	2 cut(s)	104, 107
AspS9I	GGNCC	3 cut(s)	32, 120, 165
AsuC2I	CCSGG	3 cut(s)	54, 143, 189
AvaI	CYCGRG	2 cut(s)	160, 212
AvaII	GGWCC	2 cut(s)	32, 165
BbvI	GCAGC	2 cut(s)	91, 94
BccI	CCATC	1 cut(s)	34
BcnI	CCSGG	3 cut(s)	54, 143, 189
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme1390I	CCNGG	3 cut(s)	54, 143, 189
Bme18I	GGWCC	2 cut(s)	32, 165
BmeT110I	CYCGRG	2 cut(s)	160, 212
BmgT120I	GGNCC	3 cut(s)	32, 120, 165
BmiI	GGNNCC	4 cut(s)	33, 34, 121, 167
BmrFI	CCNGG	3 cut(s)	54, 143, 189
BpuMI	CCSGG	3 cut(s)	54, 143, 189
BsaHI	GRCGYC	2 cut(s)	45, 203
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	91, 94
BseYI	CCCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	4 cut(s)	89, 122, 146, 192
BsiEI	CGRYCG	1 cut(s)	12
BsiHKCI	CYCGRG	2 cut(s)	160, 212
BsiSI	CCGG	5 cut(s)	53, 86, 114, 143, 189
BslFI	GGGAC	4 cut(s)	45, 124, 151, 202
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmFI	GGGAC	4 cut(s)	45, 124, 151, 202
BsnI	GGCC	4 cut(s)	89, 122, 146, 192
BsoBI	CYCGRG	2 cut(s)	160, 212
Bsp143I	GATC	2 cut(s)	49, 156
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	4 cut(s)	89, 122, 146, 192
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	33, 34, 121, 167
BspPI	GGATC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	49, 156
BssNI	GRCGYC	2 cut(s)	45, 203
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	2 cut(s)	45, 203
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	194, 251
BstKTI	GATC	2 cut(s)	52, 159
BstMBI	GATC	2 cut(s)	49, 156
BstMCI	CGRYCG	1 cut(s)	12
BstSCI	CCNGG	3 cut(s)	52, 141, 187
BstV1I	GCAGC	2 cut(s)	91, 94
BsuRI	GGCC	4 cut(s)	89, 122, 146, 192
Cac8I	GCNNGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	32, 120, 165
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	136, 238
CviJI	RGCY	9 cut(s)	78, 85, 89, 122, 133, 146, 151, 192, 250
CviKI_1	RGCY	9 cut(s)	78, 85, 89, 122, 133, 146, 151, 192, 250
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	194, 251
DpnI	GATC	2 cut(s)	51, 158
DpnII	GATC	2 cut(s)	49, 156
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	32, 165
Eco88I	CYCGRG	2 cut(s)	160, 212
EcoO109I	RGGNCCY	2 cut(s)	32, 165
FaeI	CATG	2 cut(s)	139, 241
FaiI	YATR	2 cut(s)	137, 239
FaqI	GGGAC	4 cut(s)	45, 124, 151, 202
FatI	CATG	2 cut(s)	135, 237
Fnu4HI	GCNGC	2 cut(s)	105, 108
Fsp4HI	GCNGC	2 cut(s)	105, 108
GluI	GCNGC	2 cut(s)	105, 108
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	4 cut(s)	89, 122, 146, 192
HapII	CCGG	5 cut(s)	53, 86, 114, 143, 189
Hin1I	GRCGYC	2 cut(s)	45, 203
Hin1II	CATG	2 cut(s)	139, 241
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	5, 215
HpaII	CCGG	5 cut(s)	53, 86, 114, 143, 189
Hpy188I	TCNGA	4 cut(s)	40, 82, 156, 201
Hpy188III	TCNNGA	3 cut(s)	30, 160, 212
Hpy99I	CGWCG	3 cut(s)	50, 205, 208
HpyCH4IV	ACGT	2 cut(s)	45, 203
HpyF3I	CTNAG	2 cut(s)	194, 251
HpySE526I	ACGT	2 cut(s)	45, 203
Hsp92I	GRCGYC	2 cut(s)	45, 203
Hsp92II	CATG	2 cut(s)	139, 241
KflI	GGGWCCC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	49, 156
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	66, 88, 99, 127, 156, 202
Lsp1109I	GCAGC	2 cut(s)	91, 94
MaeII	ACGT	2 cut(s)	45, 203
MalI	GATC	2 cut(s)	51, 158
MboI	GATC	2 cut(s)	49, 156
MboII	GAAGA	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	3 cut(s)	94, 224, 258
MnlI	CCTC	7 cut(s)	46, 156, 185, 195, 203, 236, 239
MroNI	GCCGGC	1 cut(s)	85
MspI	CCGG	5 cut(s)	53, 86, 114, 143, 189
MspR9I	CCNGG	3 cut(s)	54, 143, 189
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	3 cut(s)	54, 143, 189
NdeII	GATC	2 cut(s)	49, 156
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	139, 241
NlaIV	GGNNCC	4 cut(s)	33, 34, 121, 167
PaeR7I	CTCGAG	2 cut(s)	160, 212
PcsI	WCGNNNNNNNCGW	2 cut(s)	167, 219
PdiI	GCCGGC	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	106, 109
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	2 cut(s)	32, 165
Psp5II	RGGWCCY	2 cut(s)	32, 165
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	4 cut(s)	33, 34, 121, 167
PspPI	GGNCC	3 cut(s)	32, 120, 165
PspPPI	RGGWCCY	2 cut(s)	32, 165
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SatI	GCNGC	2 cut(s)	105, 108
Sau3AI	GATC	2 cut(s)	49, 156
Sau96I	GGNCC	3 cut(s)	32, 120, 165
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	54, 143, 189
SetI	ASST	7 cut(s)	48, 80, 135, 153, 167, 206, 252
Sfr274I	CTCGAG	2 cut(s)	160, 212
SinI	GGWCC	2 cut(s)	32, 165
SlaI	CTCGAG	2 cut(s)	160, 212
SmlI	CTYRAG	2 cut(s)	160, 212
SmoI	CTYRAG	2 cut(s)	160, 212
SsiI	CCGC	1 cut(s)	12
StyD4I	CCNGG	3 cut(s)	52, 141, 187
TaiI	ACGT	2 cut(s)	48, 206
TaqI	TCGA	5 cut(s)	8, 18, 48, 161, 213
TatI	WGTACW	1 cut(s)	126
TseI	GCWGC	2 cut(s)	104, 107
TspDTI	ATGAA	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	32, 165
XhoI	CTCGAG	2 cut(s)	160, 212
ZraI	GACGTC	2 cut(s)	46, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.