Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15971387 .. 15972308

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGGAGGGGCAGAGGAGCAGCCACGAGAGCCGCAGCGCCGCCGGCCGAACCCACCGGATACAGACCCAGTATTGGAAAAGAGGTCCGGTACCGAGGGGTGCGGAGAAGACCGTGGGGTCGGTTTGCTGCCGAGATCGATCGTTGGACCCGTGGAAGAAGACCCGGGTCTGGCTCGGCACCTTCGACTCGGCCGAAGACGCCGCCCGAGCTTATGATGCCGCCGCTCGGATCCTCCGCGGCCCCAAGGCCAAGACCAACTTCCCGATCTCCTGTGCTTACCCGCCGTTTTACAACAACCCTAACGACCCAGCTATCGAGGCAAATGGGCCCCGGCCGCCGCCTCAATTTACGACGATGGCTGCCGAGTTGTCACGGCCTAAACGACAGCCGAGGACCCCGCCTATGGTTCCGGAGGACTGCCACAGCGACTGCGACTCGTCGTCATCGGTGGTTGAGGACGACGAGGATTTCGTTGCGTCGTCGTCGTTTCGCAAGGCCCCGCTGCCCTTCGATCTTAATTTCCCACCGTTGGATGTGGATGGGGATTTGGGCGGTGGGGTGGACGGTCATGATCTTCGATGATTTTCCAGGAGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

201

Amino Acids

23.09

Weight (kDa)

12.0

Isoelectric Point (pI)

92.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	117
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	90, 178
AccBSI	CCGCTC	1 cut(s)	226
AccII	CGCG	1 cut(s)	239
AccIII	TCCGGA	1 cut(s)	411
AclWI	GGATC	2 cut(s)	225, 238
AcoI	YGGCCR	3 cut(s)	45, 191, 334
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	5 cut(s)	74, 170, 227, 405, 531
AhdI	GACNNNNNGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	2 cut(s)	211, 313
AluI	AGCT	2 cut(s)	211, 313
AlwI	GGATC	2 cut(s)	225, 238
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	2 cut(s)	164, 206
Aor13HI	TCCGGA	1 cut(s)	411
AoxI	GGCC	8 cut(s)	45, 191, 240, 248, 328, 334, 376, 497
ApaI	GGGCCC	1 cut(s)	332
ApeKI	GCWGC	5 cut(s)	20, 35, 128, 361, 504
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
Asp718I	GGTACC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	7 cut(s)	85, 147, 241, 328, 329, 395, 498
AsuC2I	CCSGG	3 cut(s)	165, 166, 333
AvaI	CYCGRG	2 cut(s)	164, 206
AvaII	GGWCC	3 cut(s)	85, 147, 395
BaeGI	GKGCMC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	90, 178
BanII	GRGCYC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	25
BbsI	GAAGAC	3 cut(s)	115, 166, 203
BbvI	GCAGC	5 cut(s)	32, 47, 115, 348, 491
BccI	CCATC	2 cut(s)	351, 535
BceAI	ACGGC	2 cut(s)	270, 391
BciT130I	CCWGG	1 cut(s)	591
BciVI	GTATCC	1 cut(s)	53
BcnI	CCSGG	3 cut(s)	165, 166, 333
BfoI	RGCGCY	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	53
Bme1390I	CCNGG	4 cut(s)	165, 166, 333, 591
Bme18I	GGWCC	3 cut(s)	85, 147, 395
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmeT110I	CYCGRG	2 cut(s)	164, 206
BmgT120I	GGNCC	7 cut(s)	85, 147, 241, 328, 329, 395, 498
BmrFI	CCNGG	4 cut(s)	165, 166, 333, 591
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	63
BoxI	GACNNNNGTC	1 cut(s)	166
BpiI	GAAGAC	3 cut(s)	115, 166, 203
BpuMI	CCSGG	3 cut(s)	165, 166, 333
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	8 cut(s)	94, 113, 151, 164, 237, 245, 331, 391
BsaWI	WCCGGW	3 cut(s)	56, 87, 411
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 170, 227, 405, 531
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	591
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	8 cut(s)	94, 113, 151, 164, 237, 245, 331, 391
BseGI	GGATG	2 cut(s)	540, 546
BseLI	CCNNNNNNNGG	5 cut(s)	74, 170, 227, 405, 531
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	19, 30
BseSI	GKGCMC	1 cut(s)	332
BseX3I	CGGCCG	3 cut(s)	45, 191, 334
BseXI	GCAGC	5 cut(s)	32, 47, 115, 348, 491
BseYI	CCCAGC	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	4 cut(s)	48, 142, 194, 337
BshFI	GGCC	8 cut(s)	47, 193, 242, 250, 330, 336, 378, 499
BshNI	GGYRCC	2 cut(s)	90, 178
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	4 cut(s)	48, 142, 194, 337
BsiHKCI	CYCGRG	2 cut(s)	164, 206
BsiSI	CCGG	6 cut(s)	44, 57, 88, 165, 333, 412
BslI	CCNNNNNNNGG	5 cut(s)	74, 170, 227, 405, 531
BsnI	GGCC	8 cut(s)	47, 193, 242, 250, 330, 336, 378, 499
BsoBI	CYCGRG	2 cut(s)	164, 206
Bsp120I	GGGCCC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp13I	TCCGGA	1 cut(s)	411
Bsp143I	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
BspANI	GGCC	8 cut(s)	47, 193, 242, 250, 330, 336, 378, 499
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	570
BspPI	GGATC	2 cut(s)	225, 238
BspT107I	GGYRCC	2 cut(s)	90, 178
BsrBI	CCGCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	8 cut(s)	94, 113, 151, 164, 237, 245, 331, 391
BssMI	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
BssNI	GRCGYC	1 cut(s)	200
BssSI	CACGAG	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	114, 530, 568
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	45
BstDSI	CCRYGG	3 cut(s)	113, 151, 237
BstF5I	GGATG	2 cut(s)	540, 546
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	6 cut(s)	138, 142, 233, 269, 516, 576
BstMBI	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
BstMCI	CGRYCG	4 cut(s)	48, 142, 194, 337
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 44, 199, 208, 217, 319, 336
BstNI	CCWGG	1 cut(s)	591
BstPAI	GACNNNNGTC	1 cut(s)	166
BstSCI	CCNGG	4 cut(s)	163, 164, 331, 589
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	5 cut(s)	32, 47, 115, 348, 491
BstV2I	GAAGAC	3 cut(s)	115, 166, 203
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BstZI	CGGCCG	3 cut(s)	45, 191, 334
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	8 cut(s)	47, 193, 242, 250, 330, 336, 378, 499
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	3 cut(s)	113, 151, 237
BtsCI	GGATG	2 cut(s)	540, 546
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	7 cut(s)	85, 147, 241, 328, 329, 395, 498
Cfr42I	CCGCGG	1 cut(s)	240
Cfr9I	CCCGGG	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	2 cut(s)	208, 467
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	571
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	6 cut(s)	137, 141, 232, 268, 515, 575
DpnII	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
DrdI	GACNNNNNNGTC	1 cut(s)	117
DriI	GACNNNNNGTC	1 cut(s)	441
DseDI	GACNNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	3 cut(s)	45, 191, 334
EagI	CGGCCG	3 cut(s)	45, 191, 334
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EclXI	CGGCCG	3 cut(s)	45, 191, 334
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	3 cut(s)	85, 147, 395
Eco52I	CGGCCG	3 cut(s)	45, 191, 334
Eco88I	CYCGRG	2 cut(s)	164, 206
EcoO109I	RGGNCCY	3 cut(s)	329, 395, 498
EcoRII	CCWGG	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	1 cut(s)	574
FaiI	YATR	3 cut(s)	215, 406, 572
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FatI	CATG	1 cut(s)	570
FauI	CCCGC	3 cut(s)	290, 407, 509
FokI	GGATG	2 cut(s)	547, 553
FriOI	GRGCYC	1 cut(s)	332
GlaI	GCGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	8 cut(s)	47, 193, 242, 250, 330, 336, 378, 499
HapII	CCGG	6 cut(s)	44, 57, 88, 165, 333, 412
HgaI	GACGC	2 cut(s)	208, 467
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	574
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	187, 436
HpaII	CCGG	6 cut(s)	44, 57, 88, 165, 333, 412
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	3 cut(s)	264, 412, 571
Hpy8I	GTNNAC	1 cut(s)	564
Hpy99I	CGWCG	6 cut(s)	357, 444, 466, 483, 486, 489
HpyAV	CCTTC	2 cut(s)	192, 519
HpyCH4III	ACNGT	3 cut(s)	114, 530, 568
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 44, 199, 208, 217, 319, 336
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	574
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	411
KpnI	GGTACC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	5 cut(s)	32, 47, 115, 348, 491
LweI	GCATC	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	6 cut(s)	137, 141, 232, 268, 515, 575
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
MboII	GAAGA	5 cut(s)	120, 168, 171, 208, 568
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	346, 519
MlyI	GAGTC	2 cut(s)	181, 430
MmeI	TCCRAC	2 cut(s)	125, 512
MroI	TCCGGA	1 cut(s)	411
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	1 cut(s)	518
MspA1I	CMGCKG	2 cut(s)	239, 504
MspI	CCGG	6 cut(s)	44, 57, 88, 165, 333, 412
MspR9I	CCNGG	4 cut(s)	165, 166, 333, 591
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	7 cut(s)	29, 44, 199, 208, 217, 319, 336
NaeI	GCCGGC	1 cut(s)	45
NciI	CCSGG	3 cut(s)	165, 166, 333
NdeII	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	574
NmeAIII	GCCGAG	5 cut(s)	155, 157, 169, 390, 416
NmuCI	GTSAC	1 cut(s)	371
PagI	TCATGA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	5 cut(s)	148, 182, 191, 381, 470
PdiI	GCCGGC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	589
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	2 cut(s)	181, 430
PpsI	GAGTC	2 cut(s)	181, 430
PpuMI	RGGWCCY	1 cut(s)	395
PshAI	GACNNNNGTC	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	589
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	589
PspOMI	GGGCCC	1 cut(s)	328
PspPI	GGNCC	7 cut(s)	85, 147, 241, 328, 329, 395, 498
PspPPI	RGGWCCY	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacII	CCGCGG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	518
Sau3AI	GATC	6 cut(s)	135, 139, 230, 266, 513, 573
Sau96I	GGNCC	7 cut(s)	85, 147, 241, 328, 329, 395, 498
SchI	GAGTC	2 cut(s)	181, 430
ScrFI	CCNGG	4 cut(s)	165, 166, 333, 591
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	5 cut(s)	87, 184, 213, 315, 600
SfaNI	GCATC	1 cut(s)	207
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
SinI	GGWCC	3 cut(s)	85, 147, 395
SmaI	CCCGGG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	346, 519
StyD4I	CCNGG	4 cut(s)	163, 164, 331, 589
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	3 cut(s)	114, 530, 568
TaqI	TCGA	5 cut(s)	138, 185, 317, 512, 579
TasI	AATT	2 cut(s)	346, 519
TauI	GCSGC	8 cut(s)	35, 43, 205, 223, 226, 242, 339, 342
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	5 cut(s)	20, 35, 128, 361, 504
Tsp45I	GTSAC	1 cut(s)	371
TspMI	CCCGGG	1 cut(s)	164
VpaK11BI	GGWCC	3 cut(s)	85, 147, 395
XmaI	CCCGGG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.