pycom03g15130

ATP synthase gamma chain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
16477973 .. 16478336
364 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGCCGACCCTTTGCTGAGACGCTTGTGGAGATCCTATACGACATCAATGAGCGGCTTCAGTTTTCAACAACTCTGTGGTAAAAAGGCCGAGGCTCGAATCGCGGAACTGAAGAAATTTGGGTTCGATATCACTCTGATCAGTGCTGGAAAAAAGGGTAACTCGTATTTTTTGCGTAGGCCTGAGATTTGTGTTGATAGGTTTATTGAAAGTGGGTTCTTTGCAGCAACAAAAGAGGCTCAGGTCATTGCCGATGACATTTTTTCGCTGTTCGTTGGCTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.51

Weight (kDa)

9.34

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 54
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 54, 104
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 43, 131
AgsI TTSAA 2 cut(s) 68, 209
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 27
AoxI GGCC 3 cut(s) 3, 87, 179
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 116
BbvI GCAGC 1 cut(s) 236
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 13
BisI GCNGC 2 cut(s) 55, 225
BlsI GCNGC 2 cut(s) 56, 226
Bpu10I CCTNAGC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 3 cut(s) 8, 174, 254
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 3 cut(s) 5, 89, 181
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 3 cut(s) 5, 89, 181
Bsp143I GATC 2 cut(s) 32, 138
BspACI CCGC 2 cut(s) 54, 104
BspANI GGCC 3 cut(s) 5, 89, 181
BspCNI CTCAG 3 cut(s) 9, 175, 253
BspFNI CGCG 1 cut(s) 104
BspPI GGATC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 32, 138
BstDEI CTNAG 3 cut(s) 17, 183, 240
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 2 cut(s) 35, 141
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 32, 138
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 3 cut(s) 5, 89, 181
BtsIMutI CAGTG 1 cut(s) 148
CseI GACGC 1 cut(s) 30
CviJI RGCY 7 cut(s) 5, 57, 89, 95, 181, 239, 279
CviKI_1 RGCY 7 cut(s) 5, 57, 89, 95, 181, 239, 279
DdeI CTNAG 3 cut(s) 17, 183, 240
DpnI GATC 2 cut(s) 34, 140
DpnII GATC 2 cut(s) 32, 138
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 181
Eco32I GATATC 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 43, 131
EcoRV GATATC 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 13
FaiI YATR 1 cut(s) 39
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 55, 225
Fsp4HI GCNGC 2 cut(s) 55, 225
GluI GCNGC 2 cut(s) 55, 225
HaeIII GGCC 3 cut(s) 5, 89, 181
HgaI GACGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 3 cut(s) 17, 183, 240
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 32, 138
LpnPI CCDG 3 cut(s) 132, 195, 227
Lsp1109I GCAGC 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 34, 140
MbiI CCGCTC 1 cut(s) 54
MboI GATC 2 cut(s) 32, 138
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 32
MluCI AATT 1 cut(s) 116
MnlI CCTC 2 cut(s) 85, 229
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 32, 138
NmeAIII GCCGAG 1 cut(s) 115
PceI AGGCCT 1 cut(s) 181
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 56, 226
PsuI RGATCY 1 cut(s) 32
SatI GCNGC 2 cut(s) 55, 225
Sau3AI GATC 2 cut(s) 32, 138
SetI ASST 2 cut(s) 203, 246
SgeI CNNG 8 cut(s) 37, 103, 108, 115, 159, 175, 194, 254
Sse9I AATT 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 2 cut(s) 54, 104
StuI AGGCCT 1 cut(s) 181
TaqI TCGA 2 cut(s) 97, 126
TasI AATT 1 cut(s) 116
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 224
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.