Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16502140 .. 16503071

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGTTATGGTTGGTTTTAAAATCAGTTTAGTTGCTTTTAAAATCTTTGACATTTTCTTGGTCAAAACCACACCGAACAAGGGTACGGCAAACCACGCTGAATCCGTGGTGGTAACTGATTTGAATTCTTGCGTGAGAGTGGCAAATGCGGCATCTTTATCGTTAGGAAGGAAGAAGGAGGAAGACGACGGCATTTTGGTGATCGAGAGAGGAGAAATGGCGAAGGGCCTGCAACAACTACAGGGACAAAACCTGCCACCGGATGTGGCCCACGTTGTCGATCAGCTGGAACGCCACTGCTTGGCTCCCGATGGTTCCCTCGGCTCCAAATCCGCATATTACGACCTCCAACTCGCCAGGGAGGAAATGTGCAGGGAAAGAATCCGTTACTTGGAAGCCATGGCAATTTATGGTGAGGCAATTGCAATGGTGGAGGAGTATCAACAGGGATTGAAGCATTCTTCTGAGGCTGAGACACTCAAAGTGAATCATCGATATCTGAAGCGTAAGGTTAACTTGTTGGAGACTCCACACTACAGTGTTTGGTGTGTAGAATCTGTTCACCCCCTAAATTCGCCATGGGCATGGCGGGCATGCCGGGAATTTACTCGAACAAGGGAACTAGCGGGTGCGTGCGTGCCACTACTGGATGCCGCTAGTAAACAGGATCTGAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS4

Protein Analysis

227

Amino Acids

25.28

Weight (kDa)

6.39

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	301
AciI	CCGC	5 cut(s)	149, 333, 589, 626, 654
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	3 cut(s)	124, 571, 602
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	4 cut(s)	80, 259, 301, 391
AgsI	TTSAA	2 cut(s)	124, 454
AjnI	CCWGG	1 cut(s)	356
AleI	CACNNNNGTG	1 cut(s)	537
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	467, 518
AlwI	GGATC	1 cut(s)	675
AlwNI	CAGNNNCTG	1 cut(s)	670
AoxI	GGCC	2 cut(s)	226, 267
ApoI	RAATTY	3 cut(s)	124, 571, 602
Asp700I	GAANNNNTTC	1 cut(s)	558
AspS9I	GGNCC	2 cut(s)	226, 268
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	211, 425, 554
BbsI	GAAGAC	1 cut(s)	189
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	2 cut(s)	102, 205
BcgI	CGANNNNNNTGC	4 cut(s)	141, 175, 211, 245
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	467, 518
BfaI	CTAG	2 cut(s)	623, 657
BfmI	CTRYAG	2 cut(s)	239, 535
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	2 cut(s)	150, 654
BlsI	GCNGC	2 cut(s)	151, 655
Bme1390I	CCNGG	2 cut(s)	358, 599
BmgT120I	GGNCC	2 cut(s)	226, 268
BmiI	GGNNCC	3 cut(s)	306, 316, 325
BmrFI	CCNGG	2 cut(s)	358, 599
BmsI	GCATC	2 cut(s)	161, 640
BpiI	GAAGAC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	493
BsaJI	CCNNGG	5 cut(s)	105, 319, 357, 399, 578
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 259, 301, 391
Bse1I	ACTGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	493
BseDI	CCNNGG	5 cut(s)	105, 319, 357, 399, 578
BseGI	GGATG	2 cut(s)	268, 655
BseLI	CCNNNNNNNGG	4 cut(s)	80, 259, 301, 391
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	456, 462
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	2 cut(s)	225, 449
BsgI	GTGCAG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	228, 269
BshVI	ATCGAT	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	260, 598
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	4 cut(s)	80, 259, 301, 391
BsmAI	GTCTC	2 cut(s)	467, 518
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	228, 269
Bsp143I	GATC	3 cut(s)	201, 280, 667
Bsp19I	CCATGG	2 cut(s)	399, 578
BspACI	CCGC	5 cut(s)	149, 333, 589, 626, 654
BspANI	GGCC	2 cut(s)	228, 269
BspCNI	CTCAG	2 cut(s)	457, 463
BspDI	ATCGAT	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	306, 316, 325
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	675
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	5 cut(s)	105, 319, 357, 399, 578
BssMI	GATC	3 cut(s)	201, 280, 667
BssT1I	CCWWGG	2 cut(s)	399, 578
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	539
BstC8I	GCNNGC	5 cut(s)	230, 591, 595, 634, 638
BstDEI	CTNAG	2 cut(s)	465, 471
BstDSI	CCRYGG	3 cut(s)	105, 399, 578
BstF5I	GGATG	2 cut(s)	268, 655
BstKTI	GATC	3 cut(s)	204, 283, 670
BstMAI	GTCTC	2 cut(s)	467, 518
BstMBI	GATC	3 cut(s)	201, 280, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 149, 590
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	597
BstSCI	CCNGG	2 cut(s)	356, 597
BstSFI	CTRYAG	2 cut(s)	239, 535
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	228, 269
BsuTUI	ATCGAT	1 cut(s)	493
BtgI	CCRYGG	3 cut(s)	105, 399, 578
BtsCI	GGATG	2 cut(s)	268, 655
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	295, 544
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	5 cut(s)	230, 591, 595, 634, 638
CaiI	CAGNNNCTG	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	226, 268
ClaI	ATCGAT	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	4 cut(s)	400, 579, 585, 594
CviJI	RGCY	7 cut(s)	228, 269, 286, 305, 324, 398, 470
CviKI_1	RGCY	7 cut(s)	228, 269, 286, 305, 324, 398, 470
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	2 cut(s)	465, 471
DpnI	GATC	3 cut(s)	203, 282, 669
DpnII	GATC	3 cut(s)	201, 280, 667
DraI	TTTAAA	2 cut(s)	19, 40
Eco130I	CCWWGG	2 cut(s)	399, 578
Eco32I	GATATC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	497
EcoT14I	CCWWGG	2 cut(s)	399, 578
ErhI	CCWWGG	2 cut(s)	399, 578
FaeI	CATG	4 cut(s)	403, 582, 588, 597
FaiI	YATR	7 cut(s)	8, 337, 401, 411, 580, 586, 595
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	399, 578, 584, 593
FauI	CCCGC	2 cut(s)	582, 619
Fnu4HI	GCNGC	2 cut(s)	150, 654
FokI	GGATG	2 cut(s)	275, 662
Fsp4HI	GCNGC	2 cut(s)	150, 654
FspBI	CTAG	2 cut(s)	623, 657
GluI	GCNGC	2 cut(s)	150, 654
HaeIII	GGCC	2 cut(s)	228, 269
HapII	CCGG	2 cut(s)	260, 598
Hin1II	CATG	4 cut(s)	403, 582, 588, 597
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	5 cut(s)	101, 381, 487, 526, 554
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	2 cut(s)	260, 598
HphI	GGTGA	3 cut(s)	211, 425, 554
Hpy166II	GTNNAC	3 cut(s)	514, 562, 662
Hpy188I	TCNGA	3 cut(s)	466, 501, 672
Hpy188III	TCNNGA	2 cut(s)	205, 308
Hpy8I	GTNNAC	3 cut(s)	514, 562, 662
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	162, 169, 217
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	232, 372, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 149, 590
HpyF3I	CTNAG	2 cut(s)	465, 471
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	4 cut(s)	403, 582, 588, 597
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	201, 280, 667
LmnI	GCTCC	2 cut(s)	310, 329
LweI	GCATC	2 cut(s)	161, 640
MaeI	CTAG	2 cut(s)	623, 657
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	112, 386
MalI	GATC	3 cut(s)	203, 282, 669
MboI	GATC	3 cut(s)	201, 280, 667
MboII	GAAGA	3 cut(s)	184, 194, 453
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	5 cut(s)	124, 405, 420, 571, 602
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	2 cut(s)	373, 501
MnlI	CCTC	8 cut(s)	172, 203, 329, 355, 356, 409, 427, 460
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	3 cut(s)	18, 39, 513
MslI	CAYNNNNRTG	3 cut(s)	197, 537, 583
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	2 cut(s)	260, 598
MspR9I	CCNGG	2 cut(s)	358, 599
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	95, 149, 590
NciI	CCSGG	1 cut(s)	599
NcoI	CCATGG	2 cut(s)	399, 578
NdeII	GATC	3 cut(s)	201, 280, 667
NlaIII	CATG	4 cut(s)	403, 582, 588, 597
NlaIV	GGNNCC	3 cut(s)	306, 316, 325
NmeAIII	GCCGAG	1 cut(s)	300
NspI	RCATGY	1 cut(s)	597
OliI	CACNNNNGTG	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	101, 381, 487, 554
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	151, 655
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	306, 316, 325
PspPI	GGNCC	2 cut(s)	226, 268
PsrI	GAACNNNNNNTAC	2 cut(s)	543, 575
PstNI	CAGNNNCTG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	3 cut(s)	197, 537, 583
SaqAI	TTAA	3 cut(s)	18, 39, 513
SatI	GCNGC	2 cut(s)	150, 654
Sau3AI	GATC	3 cut(s)	201, 280, 667
Sau96I	GGNCC	2 cut(s)	226, 268
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	358, 599
SetI	ASST	5 cut(s)	255, 276, 288, 348, 513
SfaNI	GCATC	2 cut(s)	161, 640
SfcI	CTRYAG	2 cut(s)	239, 535
SmiMI	CAYNNNNRTG	3 cut(s)	197, 537, 583
SphI	GCATGC	1 cut(s)	597
Sse9I	AATT	5 cut(s)	124, 405, 420, 571, 602
SsiI	CCGC	5 cut(s)	149, 333, 589, 626, 654
SspMI	CTAG	2 cut(s)	623, 657
StyD4I	CCNGG	2 cut(s)	356, 597
StyI	CCWWGG	2 cut(s)	399, 578
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	4 cut(s)	204, 279, 493, 610
TasI	AATT	5 cut(s)	124, 405, 420, 571, 602
TauI	GCSGC	2 cut(s)	152, 656
TfiI	GAWTC	4 cut(s)	101, 381, 487, 554
Tru1I	TTAA	3 cut(s)	18, 39, 513
Tru9I	TTAA	3 cut(s)	18, 39, 513
TscAI	CASTG	2 cut(s)	302, 544
TspGWI	ACGGA	2 cut(s)	94, 374
TspRI	CASTG	2 cut(s)	302, 544
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	3 cut(s)	124, 571, 602
XceI	RCATGY	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	2 cut(s)	623, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.