Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16997080 .. 16997865

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGGCGTAACGTTTCAAATCGTTCAGTATCTCCGGTTGGGTCTCCTCGTAGGAGGAGCCCATATAGGAAGAGTCCATCTCGAATAGAAAGATCACCTGCCCGACATAGGAGATCCAACAGGGGTAGTTCTCCGCCAAGGGAGAAACATTCAAGTCACCCTAAGTCTCCGAAGCATGCAAGGTCCCCTTCTCCTCTTGCTCGCTCTCCTTCTCCCCGGACAAAACGGTTAAGAAGAGCTCAAGCTGGAAGAGAGGCTGACAGAGTATCTGAAAGGAACAATGGGAAGGGAACTGATAAGGATTTACAGAAGGAAGTGGGTTCAGTGAGAGATGTTGGGAGCGATAGAAAGGAGAGACGATCGGGAAGAGATGATACTGATGGTAAATCTTTAACATCAAGACATGGTACTTCTCCATCAGATCGACGGCGCAGGAGTAGGCATAGATCTTCCTCACCTCAACCTGCTGGTGATACTAGAGGTGTGGAGAAAGTATTTGAGAAAGACCGTACAAGGAATGATGGCAGATGGAGTGATAGAACTATGCAAGGGGATAAGGGTTCAGATAGGGAAACTGAGAGTGACAGAGTGGAGAGAAAGCCAGGAAAAGACAGTGCTGATCGATCTTCAAGATCAAGACATGGGCGGTCTACTTCTCCATTAGATCGGCACCACCAGAACAGACATAGTTCTCATTCACCTCAACATGCTGCCAATACCAGAATTCGTGATGAGGTGTCCGGTGATATCCACACCTTCAACTTCTCAAGCCCCCCTCCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

262

Amino Acids

29.5

Weight (kDa)

11.65

Isoelectric Point (pI)

96.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	106
Acc36I	ACCTGC	2 cut(s)	106, 472
AccB1I	GGYRCC	1 cut(s)	669
AccI	GTMKAC	1 cut(s)	650
AciI	CCGC	2 cut(s)	134, 646
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	723
AfaI	GTAC	2 cut(s)	409, 511
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	18, 153, 630, 760
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	2 cut(s)	239, 245
AluI	AGCT	2 cut(s)	239, 245
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	3 cut(s)	48, 171, 349
AlwI	GGATC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	6 cut(s)	87, 149, 447, 482, 690, 755
AvaII	GGWCC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	669
BanII	GRGCYC	2 cut(s)	62, 241
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	5 cut(s)	85, 374, 424, 515, 522
BceAI	ACGGC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	3 cut(s)	48, 171, 349
BfaI	CTAG	1 cut(s)	477
BfuAI	ACCTGC	2 cut(s)	106, 472
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	1 cut(s)	711
BlsI	GCNGC	1 cut(s)	712
Bme1390I	CCNGG	2 cut(s)	217, 603
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	59, 185, 671
BmrFI	CCNGG	2 cut(s)	217, 603
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpuEI	CTTGAG	2 cut(s)	225, 751
BpuMI	CCSGG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	622
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	137, 215
BsaWI	WCCGGW	2 cut(s)	34, 740
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	603
BseCI	ATCGAT	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	137, 215
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	567
BseRI	GAGGAG	3 cut(s)	36, 70, 183
BseXI	GCAGC	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	669
BshVI	ATCGAT	1 cut(s)	622
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	35, 217, 741
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	3 cut(s)	48, 171, 349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	62, 241
Bsp143I	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
BspACI	CCGC	2 cut(s)	134, 646
BspCNI	CTCAG	1 cut(s)	568
BspDI	ATCGAT	1 cut(s)	622
BspLI	GGNNCC	3 cut(s)	59, 185, 671
BspMI	ACCTGC	2 cut(s)	106, 472
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	137, 215
BssMI	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	3 cut(s)	228, 509, 614
Bst6I	CTCTTC	4 cut(s)	65, 229, 244, 361
BstC8I	GCNNGC	2 cut(s)	177, 202
BstDEI	CTNAG	2 cut(s)	162, 576
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	9 cut(s)	95, 116, 362, 424, 449, 622, 626, 635, 667
BstMAI	GTCTC	3 cut(s)	48, 171, 349
BstMBI	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
BstMCI	CGRYCG	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	2 cut(s)	179, 710
BstSCI	CCNGG	2 cut(s)	215, 601
BstV1I	GCAGC	1 cut(s)	697
BstX2I	RGATCY	2 cut(s)	113, 446
BstYI	RGATCY	2 cut(s)	113, 446
Bsu15I	ATCGAT	1 cut(s)	622
BsuTUI	ATCGAT	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	330, 619
BveI	ACCTGC	2 cut(s)	106, 472
Cac8I	GCNNGC	2 cut(s)	177, 202
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	183
ClaI	ATCGAT	1 cut(s)	622
Csp6I	GTAC	2 cut(s)	408, 510
CviAII	CATG	4 cut(s)	176, 404, 641, 707
CviJI	RGCY	6 cut(s)	60, 239, 245, 257, 601, 771
CviKI_1	RGCY	6 cut(s)	60, 239, 245, 257, 601, 771
CviQI	GTAC	2 cut(s)	408, 510
DdeI	CTNAG	2 cut(s)	162, 576
DpnI	GATC	9 cut(s)	94, 115, 361, 423, 448, 621, 625, 634, 666
DpnII	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
Eam1104I	CTCTTC	4 cut(s)	65, 229, 244, 361
EarI	CTCTTC	4 cut(s)	65, 229, 244, 361
EciI	GGCGGA	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	2 cut(s)	62, 241
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	2 cut(s)	62, 241
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	4 cut(s)	179, 407, 644, 710
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	4 cut(s)	175, 403, 640, 706
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	1 cut(s)	711
FriOI	GRGCYC	2 cut(s)	62, 241
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	711
HapII	CCGG	3 cut(s)	35, 217, 741
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	179, 407, 644, 710
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	3 cut(s)	35, 217, 741
HphI	GGTGA	6 cut(s)	87, 149, 447, 482, 690, 755
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	4 cut(s)	171, 271, 421, 565
Hpy188III	TCNNGA	6 cut(s)	81, 363, 399, 630, 636, 728
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	5 cut(s)	198, 219, 280, 304, 766
HpyCH4III	ACNGT	3 cut(s)	228, 509, 614
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	179, 547
HpyF3I	CTNAG	2 cut(s)	162, 576
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	179, 407, 644, 710
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
LguI	GCTCTTC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	57, 339
Lsp1109I	GCAGC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	8, 155, 581
MalI	GATC	9 cut(s)	94, 115, 361, 423, 448, 621, 625, 634, 666
MboI	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
MboII	GAAGA	6 cut(s)	82, 246, 261, 378, 441, 618
MflI	RGATCY	2 cut(s)	113, 446
MhlI	GDGCHC	2 cut(s)	62, 241
MluCI	AATT	1 cut(s)	723
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	2 cut(s)	230, 392
MspI	CCGG	3 cut(s)	35, 217, 741
MspR9I	CCNGG	2 cut(s)	217, 603
MvaI	CCWGG	1 cut(s)	603
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
NlaIII	CATG	4 cut(s)	179, 407, 644, 710
NlaIV	GGNNCC	3 cut(s)	59, 185, 671
NmuCI	GTSAC	2 cut(s)	155, 581
NspI	RCATGY	2 cut(s)	179, 710
PaeI	GCATGC	1 cut(s)	179
PaqCI	CACCTGC	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	712
Ple19I	CGATCG	1 cut(s)	362
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	241
Psp1406I	AACGTT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	3 cut(s)	59, 185, 671
PspPI	GGNCC	1 cut(s)	183
PspPPI	RGGWCCY	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	113, 446
PvuI	CGATCG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	409, 511
RsaNI	GTAC	2 cut(s)	408, 510
SacI	GAGCTC	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	230, 392
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	9 cut(s)	92, 113, 359, 421, 446, 619, 623, 632, 664
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	217, 603
SduI	GDGCHC	2 cut(s)	62, 241
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	2 cut(s)	240, 766
SmoI	CTYRAG	2 cut(s)	240, 766
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	723
SsiI	CCGC	2 cut(s)	134, 646
SspMI	CTAG	1 cut(s)	477
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	215, 601
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	228, 509, 614
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	82, 424, 622
TasI	AATT	1 cut(s)	723
Tru1I	TTAA	2 cut(s)	230, 392
Tru9I	TTAA	2 cut(s)	230, 392
TscAI	CASTG	2 cut(s)	330, 619
TseFI	GTSAC	2 cut(s)	155, 581
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	2 cut(s)	155, 581
TspRI	CASTG	2 cut(s)	330, 619
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	723
XceI	RCATGY	2 cut(s)	179, 710
XmiI	GTMKAC	1 cut(s)	650
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.