pycom03g16320

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
17486902 .. 17487499
598 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
ATGGACCAGCATTTTAGATTTCGTGCGACTGGTGCAGGATTGTCATATACAGCTCCGCTTCCCACTGTTCAGTCTTTACCTAAAAGGTTACTTGGGTCGTTGAAATTTGATATTAAGAACTCATCAAATACACCCTTTTCGACTCACTTTGATTCTGATACTCTTACGACACTGAGCGACAGTCAGGAGCAGCACAGCTCCCCGGAGAATCTCTCAGGAGCCACGCCCTCCGGTACATCTTCATTTGAAACAAACAGTTACGTTAATCGGTTAAGCTTAAGCCCTTCGGTGGACTGTAGTAGAGACAGTCTGCAGGTCTATTCTGGTAGGACTTCTTCCTTAAAGGATGCAAATAGTAGGGGCCTGACGATGAGGAAGAAGAAGTCACCACAGCAAACACTTCTAGTGGAGAAAGTAGCAGGCGGCAGACCCAGAGGTCCATGTCATGGATCCAGGAGCACCAGGGTTCAAACCCTGTTCAACGGCAGACATCCTTTGTTTCTCGGCAAGGGCAGTTGGGTGAAGCTCAGTTTGAGAAACGTCATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

184

Amino Acids

20.02

Weight (kDa)

10.36

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 446
AciI CCGC 2 cut(s) 56, 423
AclWI GGATC 2 cut(s) 444, 457
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 289, 446
AflII CTTAAG 1 cut(s) 277
AgsI TTSAA 4 cut(s) 103, 248, 470, 481
AjnI CCWGG 2 cut(s) 452, 461
AluBI AGCT 4 cut(s) 53, 198, 276, 526
AluI AGCT 4 cut(s) 53, 198, 276, 526
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 1 cut(s) 297
AlwI GGATC 2 cut(s) 444, 457
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 104
AspS9I GGNCC 3 cut(s) 4, 361, 437
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 378, 532
AvaII GGWCC 2 cut(s) 4, 437
BamHI GGATCC 1 cut(s) 449
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 2 cut(s) 454, 463
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 2 cut(s) 295, 311
BfrI CTTAAG 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 304
BisI GCNGC 2 cut(s) 191, 424
BlsI GCNGC 2 cut(s) 192, 425
Bme1390I CCNGG 3 cut(s) 203, 454, 463
Bme18I GGWCC 2 cut(s) 4, 437
BmgT120I GGNCC 3 cut(s) 4, 361, 437
BmiI GGNNCC 3 cut(s) 220, 362, 451
BmrFI CCNGG 3 cut(s) 203, 454, 463
BmsI GCATC 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 201, 462
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 446
Bse1I ACTGG 1 cut(s) 34
BseBI CCWGG 2 cut(s) 454, 463
BseDI CCNNGG 2 cut(s) 201, 462
BseGI GGATG 2 cut(s) 352, 490
BseLI CCNNNNNNNGG 2 cut(s) 289, 446
BseMII CTCAG 3 cut(s) 164, 228, 541
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 2 cut(s) 203, 231
BslI CCNNNNNNNGG 2 cut(s) 289, 446
BsmAI GTCTC 1 cut(s) 297
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 1 cut(s) 449
BspACI CCGC 2 cut(s) 56, 423
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 3 cut(s) 165, 227, 540
BspLI GGNNCC 3 cut(s) 220, 362, 451
BspMAI CTGCAG 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 2 cut(s) 444, 457
BspTI CTTAAG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 201, 462
BssMI GATC 1 cut(s) 449
Bst2UI CCWGG 2 cut(s) 454, 463
Bst4CI ACNGT 5 cut(s) 67, 182, 257, 296, 308
BstAFI CTTAAG 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 3 cut(s) 173, 214, 527
BstF5I GGATG 2 cut(s) 352, 490
BstKTI GATC 1 cut(s) 452
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 1 cut(s) 449
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 2 cut(s) 454, 463
BstSCI CCNGG 3 cut(s) 201, 452, 461
BstSFI CTRYAG 2 cut(s) 295, 311
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 2 cut(s) 352, 490
BtsIMutI CAGTG 2 cut(s) 63, 170
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 421
Cfr13I GGNCC 3 cut(s) 4, 361, 437
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 441, 446
CviJI RGCY 7 cut(s) 53, 198, 221, 276, 282, 363, 526
CviKI_1 RGCY 7 cut(s) 53, 198, 221, 276, 282, 363, 526
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 3 cut(s) 173, 214, 527
DpnI GATC 1 cut(s) 451
DpnII GATC 1 cut(s) 449
DrdI GACNNNNNNGTC 1 cut(s) 435
DseDI GACNNNNNNGTC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 4, 437
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 452, 461
FaeI CATG 2 cut(s) 444, 449
FaiI YATR 5 cut(s) 46, 48, 442, 447, 545
FatI CATG 2 cut(s) 440, 445
Fnu4HI GCNGC 2 cut(s) 191, 424
FokI GGATG 2 cut(s) 359, 477
Fsp4HI GCNGC 2 cut(s) 191, 424
FspBI CTAG 1 cut(s) 404
GluI GCNGC 2 cut(s) 191, 424
HaeIII GGCC 1 cut(s) 363
HapII CCGG 2 cut(s) 203, 231
Hin1II CATG 2 cut(s) 444, 449
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 3 cut(s) 142, 152, 208
HpaII CCGG 2 cut(s) 203, 231
HphI GGTGA 2 cut(s) 378, 532
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 185, 216
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 5 cut(s) 67, 182, 257, 296, 308
HpyCH4IV ACGT 2 cut(s) 261, 540
HpyCH4V TGCA 3 cut(s) 35, 313, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 3 cut(s) 173, 214, 527
HpySE526I ACGT 2 cut(s) 261, 540
Hsp92II CATG 2 cut(s) 444, 449
Kzo9I GATC 1 cut(s) 449
LmnI GCTCC 5 cut(s) 58, 187, 203, 218, 456
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 404
MaeII ACGT 2 cut(s) 261, 540
MaeIII GTNAC 3 cut(s) 87, 257, 384
MalI GATC 1 cut(s) 451
MboI GATC 1 cut(s) 449
MboII GAAGA 4 cut(s) 231, 327, 388, 391
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 3 cut(s) 238, 366, 428
MseI TTAA 5 cut(s) 114, 264, 272, 278, 341
MspCI CTTAAG 1 cut(s) 277
MspI CCGG 2 cut(s) 203, 231
MspR9I CCNGG 3 cut(s) 203, 454, 463
MvaI CCWGG 2 cut(s) 454, 463
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 203
NdeII GATC 1 cut(s) 449
NlaIII CATG 2 cut(s) 444, 449
NlaIV GGNNCC 3 cut(s) 220, 362, 451
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 152, 208
PflMI CCANNNNNTGG 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 452
PkrI GCNGC 2 cut(s) 192, 425
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 452, 461
PspGI CCWGG 2 cut(s) 452, 461
PspN4I GGNNCC 3 cut(s) 220, 362, 451
PspPI GGNCC 3 cut(s) 4, 361, 437
PstI CTGCAG 1 cut(s) 315
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 114, 264, 272, 278, 341
SatI GCNGC 2 cut(s) 191, 424
Sau3AI GATC 1 cut(s) 449
Sau96I GGNCC 3 cut(s) 4, 361, 437
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 3 cut(s) 203, 454, 463
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 2 cut(s) 295, 311
SinI GGWCC 2 cut(s) 4, 437
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 104
SsiI CCGC 2 cut(s) 56, 423
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 3 cut(s) 201, 452, 461
TaaI ACNGT 5 cut(s) 67, 182, 257, 296, 308
TaiI ACGT 2 cut(s) 264, 543
TaqI TCGA 1 cut(s) 140
TasI AATT 1 cut(s) 104
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 2 cut(s) 152, 208
Tru1I TTAA 5 cut(s) 114, 264, 272, 278, 341
Tru9I TTAA 5 cut(s) 114, 264, 272, 278, 341
TscAI CASTG 2 cut(s) 70, 177
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 2 cut(s) 70, 177
Van91I CCANNNNNTGG 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 4, 437
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.