pycom03g17040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
18173892 .. 18175255
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGGGGACTCGAGAGGTGTACGAACCGAAGCTGAGGAGTGGGAATCTGCACCACGATCCCACCATGAATCCCGGCCTTGGAACTCCTCGCTGCCCTCGCTGCCCTCGCTGCCTCTCTCTCCTCGCCCACGATTCCGTGAATGGACCATCACTCCTGTTCTCCACGACGCCACTGCTGTTGCTGGCTCAGGTATTGGAGGAATGCTTAGTGCAATTCATAGCTTCAATACAGGTATACATGTTTCCTTTGTCTTTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.53

Weight (kDa)

6.8

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AclWI GGATC 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 225
AluBI AGCT 2 cut(s) 31, 221
AluI AGCT 2 cut(s) 31, 221
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 3 cut(s) 90, 99, 108
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 77, 86, 95
BccI CCATC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcnI CCSGG 1 cut(s) 72
BisI GCNGC 3 cut(s) 91, 100, 109
BlsI GCNGC 3 cut(s) 92, 101, 110
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 72
Bpu10I CCTNAGC 2 cut(s) 32, 186
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 23, 200
BseRI GAGGAG 3 cut(s) 49, 75, 110
BseXI GCAGC 3 cut(s) 77, 86, 95
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 24, 199
BspPI GGATC 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 235
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 32, 186, 205
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 4 cut(s) 96, 99, 105, 108
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 77, 86, 95
BstZ17I GTATAC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 159, 194
CviAII CATG 2 cut(s) 64, 238
CviJI RGCY 4 cut(s) 31, 75, 185, 221
CviKI_1 RGCY 4 cut(s) 31, 75, 185, 221
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 32, 186, 205
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 67, 241
FaiI YATR 4 cut(s) 65, 218, 235, 239
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 63, 237
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 91, 100, 109
Fsp4HI GCNGC 3 cut(s) 91, 100, 109
GluI GCNGC 3 cut(s) 91, 100, 109
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 2 cut(s) 67, 241
HinfI GANTC 4 cut(s) 7, 43, 67, 131
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 19, 235
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 19, 235
Hpy99I CGWCG 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 49, 211
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 99, 105, 108
HpyF3I CTNAG 3 cut(s) 32, 186, 205
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 67, 241
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 85, 167, 167, 173, 215
Lsp1109I GCAGC 3 cut(s) 77, 86, 95
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MluCI AATT 1 cut(s) 212
MnlI CCTC 8 cut(s) 7, 27, 96, 105, 114, 122, 131, 190
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 96, 99, 105, 108
NciI CCSGG 1 cut(s) 72
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 67, 241
NspI RCATGY 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 9
PciI ACATGT 1 cut(s) 237
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 43, 67, 131
PkrI GCNGC 3 cut(s) 92, 101, 110
PscI ACATGT 1 cut(s) 237
PspPI GGNCC 1 cut(s) 143
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SatI GCNGC 3 cut(s) 91, 100, 109
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 18, 33, 192, 223, 234
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 212
TfiI GAWTC 3 cut(s) 43, 67, 131
TscAI CASTG 1 cut(s) 177
TseI GCWGC 3 cut(s) 90, 99, 108
TspDTI ATGAA 2 cut(s) 80, 205
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 143
XceI RCATGY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.