pycom03g17070

trafficking protein particle complex

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
18198831 .. 18199288
458 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGATAGCTGGGAGGAAAAATGGCATGAATCTCTTCTGCAAAACAAGGTACAAGGATAGAAATCTCAATATTATGTGTGCCTCTAGTGGCAGGATACGTTTGCCCCCACCTCAACTTGGTCTGCCGGATGTTGGTGAATCGAATATAAGTTGCAGTCCTGCAGGGCCTCATCTGGTTTGTATCTTGCATCCGGTTCTGAGCTCCTCCTTATGTATGACAATTGGGCATGTCCAAGTGTGTGTGACAATTGGGCATGCTCAATTGCAAAAGGAAAGGGAGCAGGGCCCTCATCTTCACAGCCTCTTTTTAAGAAGAAAAAAAGCAACGGAAACTTGA

Protein Analysis

112

Amino Acids

12.21

Weight (kDa)

9.63

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 116, 131
AluBI AGCT 2 cut(s) 8, 201
AluI AGCT 2 cut(s) 8, 201
Alw21I GWGCWC 1 cut(s) 203
AoxI GGCC 2 cut(s) 164, 283
ApaI GGGCCC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 164, 283, 284
AsuHPI GGTGA 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 203, 287
Bbv12I GWGCWC 1 cut(s) 203
BciVI GTATCC 1 cut(s) 87
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 159
BfuI GTATCC 1 cut(s) 87
BmgT120I GGNCC 3 cut(s) 164, 283, 284
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 131
Bse8I GATNNNNATC 1 cut(s) 60
BseGI GGATG 2 cut(s) 133, 187
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 116, 131
BseMII CTCAG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 8
BshFI GGCC 2 cut(s) 166, 285
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 125, 191
BslI CCNNNNNNNGG 2 cut(s) 116, 131
BsnI GGCC 2 cut(s) 166, 285
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 203, 287
BspANI GGCC 2 cut(s) 166, 285
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 2 cut(s) 133, 187
BstNSI RCATGY 2 cut(s) 230, 257
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 287
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 166, 285
BtsCI GGATG 2 cut(s) 133, 187
Cac8I GCNNGC 1 cut(s) 255
Cfr13I GGNCC 3 cut(s) 164, 283, 284
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 25, 227, 254
CviJI RGCY 5 cut(s) 8, 166, 201, 285, 300
CviKI_1 RGCY 5 cut(s) 8, 166, 201, 285, 300
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 201
Eco24I GRGCYC 2 cut(s) 203, 287
Eco53kI GAGCTC 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 201
EcoO109I RGGNCCY 3 cut(s) 164, 283, 284
EcoT38I GRGCYC 2 cut(s) 203, 287
FaeI CATG 3 cut(s) 28, 230, 257
FaiI YATR 7 cut(s) 26, 74, 146, 211, 215, 228, 255
FatI CATG 3 cut(s) 24, 226, 253
FokI GGATG 2 cut(s) 140, 174
FriOI GRGCYC 2 cut(s) 203, 287
FspBI CTAG 1 cut(s) 84
GsaI CCCAGC 1 cut(s) 12
HaeIII GGCC 2 cut(s) 166, 285
HapII CCGG 2 cut(s) 125, 191
Hin1II CATG 3 cut(s) 28, 230, 257
HinfI GANTC 2 cut(s) 28, 137
HpaII CCGG 2 cut(s) 125, 191
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 39, 153, 161, 187, 265
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 28, 230, 257
LmnI GCTCC 2 cut(s) 206, 277
LpnPI CCDG 7 cut(s) 76, 138, 147, 158, 171, 204, 266
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 241
MboII GAAGA 3 cut(s) 25, 284, 324
MfeI CAATTG 3 cut(s) 219, 246, 260
MhlI GDGCHC 2 cut(s) 203, 287
MluCI AATT 3 cut(s) 219, 246, 260
MnlI CCTC 7 cut(s) 6, 91, 120, 177, 214, 297, 311
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 308
MspI CCGG 2 cut(s) 125, 191
MunI CAATTG 3 cut(s) 219, 246, 260
NlaIII CATG 3 cut(s) 28, 230, 257
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 2 cut(s) 230, 257
PaeI GCATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 28, 137
Psp124BI GAGCTC 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 285
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 3 cut(s) 164, 283, 284
PstI CTGCAG 1 cut(s) 163
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 308
Sau96I GGNCC 3 cut(s) 164, 283, 284
SbfI CCTGCAGG 1 cut(s) 163
SdaI CCTGCAGG 1 cut(s) 163
SduI GDGCHC 2 cut(s) 203, 287
SetI ASST 5 cut(s) 10, 50, 100, 112, 203
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 159
SphI GCATGC 1 cut(s) 257
Sse8387I CCTGCAGG 1 cut(s) 163
Sse9I AATT 3 cut(s) 219, 246, 260
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 203
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 219, 246, 260
TfiI GAWTC 2 cut(s) 28, 137
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 41
XceI RCATGY 2 cut(s) 230, 257
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.