pycom03g17220

Protochlorophyllide reductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
18399410 .. 18399817
408 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGCTCTTCAGGCTGCTTCTGTGGTTTCTTCTGCTTTCTCTGTCCCCAAAGAGGGAAAGTCAGGTGCTTCTTTCAAGGATTCGAGTCTGTTCGGAGTATCCTTCTCGGAAAATCTCAAGGCGGAGTTCAGCTCTGTTGCATTGAGCTGCAAGGTAGGAAAATACTCTACCATTCTACTCTTCTTCTGCAGAACACAAAACGCGTTTCTTCTTGTTGCAAAAACAAAAACTGACTCAGAATTATATGAATAG

Protein Analysis

84

Amino Acids

8.9

Weight (kDa)

8.64

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 52, 53
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 2 cut(s) 132, 147
AluI AGCT 2 cut(s) 132, 147
ApeKI GCWGC 2 cut(s) 14, 147
BbvI GCAGC 1 cut(s) 134
BciVI GTATCC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 187
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 2 cut(s) 15, 148
BlsI GCNGC 2 cut(s) 16, 149
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuEI CTTGAG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 53
BseLI CCNNNNNNNGG 2 cut(s) 52, 53
BseMII CTCAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 52, 53
BsmFI GGGAC 1 cut(s) 29
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 248
BspFNI CGCG 1 cut(s) 203
BspMAI CTGCAG 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 12, 185
BstDEI CTNAG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 187
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 134
BsuI GTATCC 1 cut(s) 109
CviJI RGCY 4 cut(s) 5, 14, 132, 147
CviKI_1 RGCY 4 cut(s) 5, 14, 132, 147
DdeI CTNAG 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 12, 185
EarI CTCTTC 2 cut(s) 12, 185
EciI GGCGGA 1 cut(s) 137
FaiI YATR 2 cut(s) 244, 246
FaqI GGGAC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 15, 148
Fsp4HI GCNGC 2 cut(s) 15, 148
GluI GCNGC 2 cut(s) 15, 148
HinfI GANTC 3 cut(s) 80, 85, 233
Hpy188I TCNGA 3 cut(s) 95, 109, 238
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 140, 150, 189, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 235
LguI GCTCTTC 1 cut(s) 12
LpnPI CCDG 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 134
MboII GAAGA 4 cut(s) 21, 172, 175, 200
MluCI AATT 1 cut(s) 239
MluI ACGCGT 1 cut(s) 201
MlyI GAGTC 2 cut(s) 94, 227
MnlI CCTC 1 cut(s) 46
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 16, 149
PleI GAGTC 2 cut(s) 93, 227
PpsI GAGTC 2 cut(s) 93, 227
PstI CTGCAG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 12
SatI GCNGC 2 cut(s) 15, 148
SchI GAGTC 2 cut(s) 94, 227
SetI ASST 4 cut(s) 67, 134, 149, 156
SfcI CTRYAG 1 cut(s) 187
SgeI CNNG 9 cut(s) 23, 75, 88, 96, 118, 130, 163, 214, 224
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 239
SsiI CCGC 1 cut(s) 122
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 239
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 2 cut(s) 14, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.