pycom03g17670

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
18797615 .. 18798264
650 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 477 bp
ATGAAGATTCCGTACAAGTTTCTCGTCCTCAGAGCTGACAGCAGTGGCAGGACGATCGTGGATTCCGGATCGACCATCACGTTCATGGAGAAGCCGGTTTTCGAAGCTATGGCGCAAGGGTTTGAGTCACAGATGGAAAATTACACGAGAGCAAAGGACGTGGAAACCAAAATGGGATTGAGACCCTGTTTCGATATTTTGAAAGAGGAAAAATTGGAGTTTCCGAACTTGGTTTTCCAGTTCAAAAGGGGTGCTAAGATGGAGCTACCATTGACGAATTACTTTTCACTAGTTTCGAGCTCGGGGGTTGTATGCTTGACGATTGTTAGTGATAGGCAAAGAGTAATGACGGACTCAATCCTTTTGCGCAGAGAGCTCAAATGGCTCATGGAAGACTCAATCGAAGAACCCAAAAACGTCGATAACAACGACATAAGCGTTAGGCTAAGGGGTTTTGATTCCAAGGCCAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

159

Amino Acids

18.2

Weight (kDa)

6.4

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 3 - 114 7.5e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 65
AclWI GGATC 1 cut(s) 76
AfaI GTAC 1 cut(s) 14
AgsI TTSAA 2 cut(s) 202, 244
AhlI ACTAGT 1 cut(s) 289
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 5 cut(s) 35, 107, 265, 300, 376
AluI AGCT 5 cut(s) 35, 107, 265, 300, 376
Alw21I GWGCWC 2 cut(s) 302, 378
Alw26I GTCTC 2 cut(s) 175, 465
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 474
Ama87I CYCGRG 1 cut(s) 301
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 1 cut(s) 465
AspLEI GCGC 2 cut(s) 115, 369
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 301
BanII GRGCYC 2 cut(s) 302, 378
BarI GAAGNNNNNNTAC 1 cut(s) 28
BauI CACGAG 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 302, 378
BccI CCATC 3 cut(s) 83, 127, 253
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BcoDI GTCTC 2 cut(s) 175, 465
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 301
BmgBI CACGTC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 462
BsaWI WCCGGW 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 238
BseAI TCCGGA 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 467
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 302, 378
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 2 cut(s) 66, 95
BsmAI GTCTC 2 cut(s) 175, 465
BsnI GGCC 1 cut(s) 467
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 301
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 302, 378
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 2 cut(s) 54, 68
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 65
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 2 cut(s) 54, 68
BssSI CACGAG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 29, 255, 446
BstHHI GCGC 2 cut(s) 115, 369
BstKTI GATC 2 cut(s) 57, 71
BstMAI GTCTC 2 cut(s) 175, 465
BstMBI GATC 2 cut(s) 54, 68
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 373, 382
BstV2I GAAGAC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 467
BtrI CACGTC 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 474
CfoI GCGC 2 cut(s) 115, 369
Cfr10I RCCGGY 1 cut(s) 94
Csp6I GTAC 1 cut(s) 13
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 2 cut(s) 85, 388
CviJI RGCY 9 cut(s) 35, 94, 107, 265, 300, 376, 385, 445, 467
CviKI_1 RGCY 9 cut(s) 35, 94, 107, 265, 300, 376, 385, 445, 467
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 3 cut(s) 29, 255, 446
DpnI GATC 2 cut(s) 56, 70
DpnII GATC 2 cut(s) 54, 68
Ecl136II GAGCTC 2 cut(s) 300, 376
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 2 cut(s) 302, 378
Eco31I GGTCTC 1 cut(s) 175
Eco53kI GAGCTC 2 cut(s) 300, 376
Eco88I CYCGRG 1 cut(s) 301
EcoICRI GAGCTC 2 cut(s) 300, 376
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 2 cut(s) 302, 378
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 2 cut(s) 88, 391
FaiI YATR 5 cut(s) 86, 110, 313, 389, 434
FatI CATG 2 cut(s) 84, 387
FriOI GRGCYC 2 cut(s) 302, 378
FspBI CTAG 1 cut(s) 290
FspI TGCGCA 1 cut(s) 368
GlaI GCGC 2 cut(s) 114, 368
HaeIII GGCC 1 cut(s) 467
HapII CCGG 2 cut(s) 66, 95
HhaI GCGC 2 cut(s) 115, 369
Hin1II CATG 2 cut(s) 88, 391
Hin6I GCGC 2 cut(s) 113, 367
HinP1I GCGC 2 cut(s) 113, 367
HinfI GANTC 6 cut(s) 7, 62, 125, 353, 395, 458
HpaII CCGG 2 cut(s) 66, 95
Hpy188I TCNGA 2 cut(s) 32, 225
Hpy188III TCNNGA 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 422
HpyCH4IV ACGT 3 cut(s) 80, 159, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 382
HpyF3I CTNAG 3 cut(s) 29, 255, 446
HpySE526I ACGT 3 cut(s) 80, 159, 417
Hsp92II CATG 2 cut(s) 88, 391
HspAI GCGC 2 cut(s) 113, 367
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 2 cut(s) 54, 68
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 34, 79, 108, 199, 251
MaeI CTAG 1 cut(s) 290
MaeII ACGT 3 cut(s) 80, 159, 417
MaeIII GTNAC 1 cut(s) 126
MalI GATC 2 cut(s) 56, 70
MboI GATC 2 cut(s) 54, 68
MboII GAAGA 3 cut(s) 16, 404, 416
MhlI GDGCHC 2 cut(s) 302, 378
MluCI AATT 3 cut(s) 139, 212, 277
MlyI GAGTC 3 cut(s) 134, 347, 389
MnlI CCTC 2 cut(s) 38, 199
MroI TCCGGA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 66, 95
MwoI GCNNNNNNNGC 2 cut(s) 373, 382
NdeII GATC 2 cut(s) 54, 68
NlaIII CATG 2 cut(s) 88, 391
NmuCI GTSAC 1 cut(s) 126
NsbI TGCGCA 1 cut(s) 368
NspV TTCGAA 1 cut(s) 102
PcsI WCGNNNNNNNCGW 3 cut(s) 77, 426, 435
PfeI GAWTC 3 cut(s) 7, 62, 458
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 3 cut(s) 133, 347, 389
PpsI GAGTC 3 cut(s) 133, 347, 389
Psp124BI GAGCTC 2 cut(s) 302, 378
PstNI CAGNNNCTG 1 cut(s) 474
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 2 cut(s) 302, 378
Sau3AI GATC 2 cut(s) 54, 68
SchI GAGTC 3 cut(s) 134, 347, 389
SduI GDGCHC 2 cut(s) 302, 378
SetI ASST 8 cut(s) 37, 83, 109, 162, 267, 302, 378, 420
SfuI TTCGAA 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 289
Sse9I AATT 3 cut(s) 139, 212, 277
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 2 cut(s) 302, 378
StyI CCWWGG 1 cut(s) 462
TaiI ACGT 3 cut(s) 83, 162, 420
TaqI TCGA 6 cut(s) 71, 102, 192, 296, 402, 420
TasI AATT 3 cut(s) 139, 212, 277
TfiI GAWTC 3 cut(s) 7, 62, 458
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 17, 73
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.