Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18882874 .. 18883314

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTCAAATTTGTGGTTATTTCTCCATATATTTCATCTCTCTCGAGGTCTCTCTGTTCACTCCGCCTCTACCTCTCTTTCCCCCACCTTCTCCGAGTATCGATTCCGACCACCACACCATACCCTCTCCTCTCATCTCCCTCCAGCCACCACGGTCCACACCATACCCTCTCTCGAGTTCTCGACTCTCATATCTCTCTCTTCCTCCCTAATTGTTCATCTCTCGAACTCTCCTCCTTCCTTATTCTCCACATTTGTCAGTCCACGGCGCCGTGGGTGTCCTCCATGGCCAAGGCGTACCCATGGCTCGAGAAGCTCTGCCTGAAGCGGATGTCCGCGACGGATGATGATCTTGCTCTATTGGCTGAGTCGTTTGCTGGGTTCAAGGAGATCATCCTCGTTTGCTGGGTTCGGGACCAACGGGCTCGCCGTCCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000822 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010011 GO:0010033 GO:0019005 GO:0023052 GO:0031461 GO:0032870 GO:0032991 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043178 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

147

Amino Acids

16.51

Weight (kDa)

9.33

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	1 cut(s)	338
AciI	CCGC	3 cut(s)	64, 328, 336
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	385
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	54
Ama87I	CYCGRG	3 cut(s)	43, 174, 308
AoxI	GGCC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	155, 415
AvaI	CYCGRG	3 cut(s)	43, 174, 308
AvaII	GGWCC	2 cut(s)	155, 415
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	427
BceAI	ACGGC	3 cut(s)	256, 282, 414
BcoDI	GTCTC	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	155, 415
BmeT110I	CYCGRG	3 cut(s)	43, 174, 308
BmgT120I	GGNCC	2 cut(s)	155, 415
BmiI	GGNNCC	2 cut(s)	270, 416
BpmI	CTGGAG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	6 cut(s)	151, 264, 272, 285, 291, 302
Bse8I	GATNNNNATC	1 cut(s)	348
BseCI	ATCGAT	1 cut(s)	101
BseDI	CCNNGG	6 cut(s)	151, 264, 272, 285, 291, 302
BseGI	GGATG	3 cut(s)	336, 349, 393
BseJI	GATNNNNATC	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	119, 223
BseYI	CCCAGC	2 cut(s)	377, 405
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	101
BsiHKCI	CYCGRG	3 cut(s)	43, 174, 308
BslFI	GGGAC	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	3 cut(s)	43, 174, 308
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	349, 390
Bsp19I	CCATGG	2 cut(s)	285, 302
BspACI	CCGC	3 cut(s)	64, 328, 336
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	358
BspDI	ATCGAT	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	2 cut(s)	270, 416
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	54
BssECI	CCNNGG	6 cut(s)	151, 264, 272, 285, 291, 302
BssMI	GATC	2 cut(s)	349, 390
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	3 cut(s)	285, 291, 302
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	5 cut(s)	151, 264, 272, 285, 302
BstF5I	GGATG	3 cut(s)	336, 349, 393
BstFNI	CGCG	1 cut(s)	338
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	352, 393
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	2 cut(s)	349, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 362
BstUI	CGCG	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	101
BtgI	CCRYGG	5 cut(s)	151, 264, 272, 285, 302
BtsCI	GGATG	3 cut(s)	336, 349, 393
Cac8I	GCNNGC	1 cut(s)	427
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	155, 415
ClaI	ATCGAT	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	286, 303
CviJI	RGCY	6 cut(s)	147, 290, 307, 316, 365, 425
CviKI_1	RGCY	6 cut(s)	147, 290, 307, 316, 365, 425
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	366
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	2 cut(s)	351, 392
DpnII	GATC	2 cut(s)	349, 390
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	285, 291, 302
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	155, 415
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	3 cut(s)	43, 174, 308
EcoT14I	CCWWGG	3 cut(s)	285, 291, 302
EcoT38I	GRGCYC	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	3 cut(s)	285, 291, 302
FaeI	CATG	2 cut(s)	289, 306
FaiI	YATR	7 cut(s)	28, 30, 121, 165, 192, 287, 304
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	2 cut(s)	285, 302
FokI	GGATG	3 cut(s)	343, 356, 380
FriOI	GRGCYC	1 cut(s)	427
GlaI	GCGC	1 cut(s)	270
GsaI	CCCAGC	2 cut(s)	381, 409
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	289, 306
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	103, 185, 368
Hpy166II	GTNNAC	3 cut(s)	59, 158, 264
Hpy188I	TCNGA	2 cut(s)	95, 108
Hpy188III	TCNNGA	6 cut(s)	43, 174, 182, 224, 310, 413
Hpy8I	GTNNAC	3 cut(s)	59, 158, 264
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	98, 247
HpyCH4III	ACNGT	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 362
HpyF3I	CTNAG	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	289, 306
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	349, 390
LpnPI	CCDG	4 cut(s)	157, 335, 363, 391
MalI	GATC	2 cut(s)	351, 392
MboI	GATC	2 cut(s)	349, 390
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	8, 211
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	179, 377
MmeI	TCCRAC	1 cut(s)	131
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	313, 362
NarI	GGCGCC	1 cut(s)	269
NcoI	CCATGG	2 cut(s)	285, 302
NdeII	GATC	2 cut(s)	349, 390
NlaIII	CATG	2 cut(s)	289, 306
NlaIV	GGNNCC	2 cut(s)	270, 416
PaeR7I	CTCGAG	3 cut(s)	43, 174, 308
PcsI	WCGNNNNNNNCGW	2 cut(s)	427, 433
PfeI	GAWTC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	179, 376
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	179, 376
PspFI	CCCAGC	2 cut(s)	377, 405
PspN4I	GGNNCC	2 cut(s)	270, 416
PspPI	GGNCC	2 cut(s)	155, 415
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
Sau3AI	GATC	2 cut(s)	349, 390
Sau96I	GGNCC	2 cut(s)	155, 415
SchI	GAGTC	2 cut(s)	179, 377
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	4 cut(s)	50, 75, 90, 318
SfoI	GGCGCC	1 cut(s)	270
Sfr274I	CTCGAG	3 cut(s)	43, 174, 308
SinI	GGWCC	2 cut(s)	155, 415
SlaI	CTCGAG	3 cut(s)	43, 174, 308
SmlI	CTYRAG	3 cut(s)	43, 174, 308
SmoI	CTYRAG	3 cut(s)	43, 174, 308
Sse9I	AATT	2 cut(s)	8, 211
SsiI	CCGC	3 cut(s)	64, 328, 336
SspDI	GGCGCC	1 cut(s)	268
StyI	CCWWGG	3 cut(s)	285, 291, 302
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	6 cut(s)	44, 101, 175, 183, 225, 309
TasI	AATT	2 cut(s)	8, 211
TfiI	GAWTC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	24, 207
TspGWI	ACGGA	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	155, 415
XapI	RAATTY	1 cut(s)	8
XhoI	CTCGAG	3 cut(s)	43, 174, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.