Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19150080 .. 19150668

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGTGGGCTTGGAGTTGTAATGTACCATATTCAAGTATTTGTGCTTAGAATAGTGGCAGTTGATGCACTGAGGACATATGTGGACCGATTTTACGAACAAAGTAAAGTGTTATGCAACATCATACAGTCACACGTCCGCGGTCCTTCCCTCCTGTCCTTAATTTACTCCTCCATTTCTGTTTTTAACTTTCCATCACAACTTGCACTCTCCCTTCTCCTTGCTGCTATCTCTATTACATGGTTGTTGGGTTCTCCGCTCCAACGGGACTCTGTTGCTCTGTTTAAGACCTTCTCGTGGAATTTTACTTCGACCATATTAGTTGATCCCTACGAGATCGACGTTTCAACGGACAACACAACATCAATGGTTCTAGTTCCACTGCTAAGCCTAATTACTAGTACTTCTACGCCAAAGATTGGTGGATGTGCTGTCTTGCTTGCTGGGTTGGGTTTGGTTTGGTTAGTCTTCTGGAAAAAAAAGGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.01

Weight (kDa)

9.26

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	259
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	139, 141, 257
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	2 cut(s)	26, 403
AfiI	CCNNNNNNNGG	2 cut(s)	297, 419
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	35, 348
AhlI	ACTAGT	1 cut(s)	398
AjiI	CACGTC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	85, 143
AvaII	GGWCC	2 cut(s)	85, 143
BauI	CACGAG	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	2 cut(s)	374, 399
BisI	GCNGC	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	85, 143
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	85, 143
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	460
Bpu1102I	GCTNAGC	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 419
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	297, 419
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	297, 419
BsmFI	GGGAC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	325, 336
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	3 cut(s)	139, 141, 257
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	325, 336
BssSI	CACGAG	1 cut(s)	295
Bst2BI	CACGAG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	47, 71, 386
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	431
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	328, 339
BstMBI	GATC	2 cut(s)	325, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	139
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	431
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	68, 380
Cac8I	GCNNGC	1 cut(s)	441
Cfr13I	GGNCC	2 cut(s)	85, 143
Cfr42I	CCGCGG	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	25, 402
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	2 cut(s)	10, 390
CviKI_1	RGCY	2 cut(s)	10, 390
CviQI	GTAC	2 cut(s)	25, 402
DdeI	CTNAG	3 cut(s)	47, 71, 386
DpnI	GATC	2 cut(s)	327, 338
DpnII	GATC	2 cut(s)	325, 336
Eco47I	GGWCC	2 cut(s)	85, 143
FaeI	CATG	1 cut(s)	243
FaiI	YATR	7 cut(s)	30, 79, 81, 115, 125, 241, 317
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	239
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	2 cut(s)	374, 399
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	243
HinfI	GANTC	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	156, 224, 301
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	2 cut(s)	135, 342
HpyCH4V	TGCA	3 cut(s)	68, 117, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	3 cut(s)	47, 71, 386
HpySE526I	ACGT	2 cut(s)	135, 342
Hsp92II	CATG	1 cut(s)	243
KspI	CCGCGG	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	325, 336
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	3 cut(s)	167, 429, 457
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	374, 399
MaeII	ACGT	2 cut(s)	135, 342
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	2 cut(s)	327, 338
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	2 cut(s)	325, 336
MboII	GAAGA	1 cut(s)	460
MluCI	AATT	4 cut(s)	162, 301, 393, 487
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	3 cut(s)	66, 161, 181
MseI	TTAA	4 cut(s)	161, 186, 285, 490
MspA1I	CMGCKG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	2 cut(s)	325, 336
NlaIII	CATG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	443
PspPI	GGNCC	2 cut(s)	85, 143
RsaI	GTAC	2 cut(s)	26, 403
RsaNI	GTAC	2 cut(s)	25, 402
SacII	CCGCGG	1 cut(s)	142
SaqAI	TTAA	4 cut(s)	161, 186, 285, 490
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	325, 336
Sau96I	GGNCC	2 cut(s)	85, 143
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	1 cut(s)	263
SetI	ASST	3 cut(s)	138, 293, 345
SfaNI	GCATC	1 cut(s)	55
Sfr303I	CCGCGG	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	142
SinI	GGWCC	2 cut(s)	85, 143
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	4 cut(s)	162, 301, 393, 487
SsiI	CCGC	3 cut(s)	139, 141, 257
SspMI	CTAG	2 cut(s)	374, 399
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	2 cut(s)	138, 345
TaqI	TCGA	2 cut(s)	311, 339
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	162, 301, 393, 487
TatI	WGTACW	1 cut(s)	401
Tru1I	TTAA	4 cut(s)	161, 186, 285, 490
Tru9I	TTAA	4 cut(s)	161, 186, 285, 490
TscAI	CASTG	2 cut(s)	75, 387
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	2 cut(s)	75, 387
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	85, 143
XapI	RAATTY	1 cut(s)	301
XspI	CTAG	2 cut(s)	374, 399
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.