pycom03g18220

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
19240554 .. 19241698
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGGGATCAAAGGAGAACAACCCAGCTCTCGTCAGGCCTTCAAATTTCCAAGGTTGCTATCCAAAGAATTTGATACTAATATTTCAATGTTTGTATAGGAGGTTTGCACAATTGCTCCAGCAGCAGCCGAAGGAAACCAAGGAAGTGTCTGTGAGTTCATTTGCTGCAAATCCAAAGGCTGTGGAGAATATTGAGGATGAGGCTTGTGATGCTCATGTGCCAATGTTCGTTAAGCACACCCAAGAAGAAGATGAAAATGTGGAGGATGAGGACCCCATTATGGACAGCAGCAGCTCTAAGGATCCGCTTAATTTTGTTAAGTACATAGCTGACATCTACGCTCACTACGGCGAAACTGAGATGAGCTTCGAAACTGAAAGCACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

4.51

Isoelectric Point (pI)

63.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AclWI GGATC 3 cut(s) 13, 296, 309
AcsI RAATTY 2 cut(s) 43, 67
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 42, 86
AluBI AGCT 4 cut(s) 26, 294, 329, 366
AluI AGCT 4 cut(s) 26, 294, 329, 366
AlwI GGATC 3 cut(s) 13, 296, 309
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 5 cut(s) 121, 124, 164, 288, 291
ApoI RAATTY 2 cut(s) 43, 67
AspS9I GGNCC 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 369
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 301
BbvI GCAGC 5 cut(s) 133, 136, 151, 300, 303
BceAI ACGGC 1 cut(s) 364
BisI GCNGC 5 cut(s) 122, 125, 165, 289, 292
BlsI GCNGC 5 cut(s) 123, 126, 166, 290, 293
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 273, 303
BmsI GCATC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 49, 138
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 49, 138
BseGI GGATG 2 cut(s) 202, 271
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 348
BseXI GCAGC 5 cut(s) 133, 136, 151, 300, 303
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 280
BsnI GGCC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 5, 301
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 273, 303
BspPI GGATC 3 cut(s) 13, 296, 309
BspT104I TTCGAA 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 49, 138
BssMI GATC 2 cut(s) 5, 301
BssT1I CCWWGG 2 cut(s) 49, 138
BstBI TTCGAA 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 297, 357
BstF5I GGATG 2 cut(s) 202, 271
BstKTI GATC 2 cut(s) 8, 304
BstMBI GATC 2 cut(s) 5, 301
BstMWI GCNNNNNNNGC 2 cut(s) 121, 209
BstV1I GCAGC 5 cut(s) 133, 136, 151, 300, 303
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 202, 271
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 2 cut(s) 215, 387
CviJI RGCY 8 cut(s) 26, 37, 127, 179, 203, 294, 329, 366
CviKI_1 RGCY 8 cut(s) 26, 37, 127, 179, 203, 294, 329, 366
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 297, 357
DpnI GATC 2 cut(s) 7, 303
DpnII GATC 2 cut(s) 5, 301
Eco130I CCWWGG 2 cut(s) 49, 138
Eco147I AGGCCT 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 49, 138
ErhI CCWWGG 2 cut(s) 49, 138
FaeI CATG 2 cut(s) 218, 390
FaiI YATR 5 cut(s) 96, 216, 281, 326, 388
FatI CATG 2 cut(s) 214, 386
Fnu4HI GCNGC 5 cut(s) 122, 125, 165, 289, 292
FokI GGATG 2 cut(s) 209, 278
Fsp4HI GCNGC 5 cut(s) 122, 125, 165, 289, 292
GluI GCNGC 5 cut(s) 122, 125, 165, 289, 292
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 37
Hin1II CATG 2 cut(s) 218, 390
HpyAV CCTTC 2 cut(s) 48, 124
HpyCH4V TGCA 3 cut(s) 107, 167, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 209
HpyF3I CTNAG 2 cut(s) 297, 357
Hsp92II CATG 2 cut(s) 218, 390
Kzo9I GATC 2 cut(s) 5, 301
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 3 cut(s) 19, 36, 131
Lsp1109I GCAGC 5 cut(s) 133, 136, 151, 300, 303
LweI GCATC 1 cut(s) 199
MalI GATC 2 cut(s) 7, 303
MboI GATC 2 cut(s) 5, 301
MboII GAAGA 2 cut(s) 257, 260
MfeI CAATTG 1 cut(s) 110
MflI RGATCY 1 cut(s) 301
MluCI AATT 4 cut(s) 43, 67, 110, 310
MnlI CCTC 5 cut(s) 93, 187, 193, 256, 262
MseI TTAA 3 cut(s) 231, 309, 318
MunI CAATTG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 121, 209
NdeII GATC 2 cut(s) 5, 301
NlaIII CATG 2 cut(s) 218, 390
NlaIV GGNNCC 2 cut(s) 273, 303
NspV TTCGAA 1 cut(s) 369
PceI AGGCCT 1 cut(s) 37
PkrI GCNGC 5 cut(s) 123, 126, 166, 290, 293
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 273, 303
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 3 cut(s) 231, 309, 318
SatI GCNGC 5 cut(s) 122, 125, 165, 289, 292
Sau3AI GATC 2 cut(s) 5, 301
Sau96I GGNCC 1 cut(s) 271
SetI ASST 6 cut(s) 28, 55, 104, 296, 331, 368
SfaNI GCATC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 369
SgeI CNNG 9 cut(s) 35, 41, 46, 62, 130, 151, 216, 227, 254
SinI GGWCC 1 cut(s) 271
Sse9I AATT 4 cut(s) 43, 67, 110, 310
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 1 cut(s) 305
SspI AATATT 2 cut(s) 81, 190
StuI AGGCCT 1 cut(s) 37
StyI CCWWGG 2 cut(s) 49, 138
TaqI TCGA 1 cut(s) 369
TasI AATT 4 cut(s) 43, 67, 110, 310
TatI WGTACW 1 cut(s) 321
Tru1I TTAA 3 cut(s) 231, 309, 318
Tru9I TTAA 3 cut(s) 231, 309, 318
TscAI CASTG 1 cut(s) 388
TseI GCWGC 5 cut(s) 121, 124, 164, 288, 291
TspDTI ATGAA 2 cut(s) 147, 267
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 43, 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.