pycom03g18570

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Reverse (-)
19538049 .. 19538433
385 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGGATTGCCTCCGAGTTCAGGTGGGCTACCATCTGGTAGGTATCCAGAGGGCGGGCACTACGCCCTGTCAGCATATCAGAATCAGCACCACCAGCAAGCTGGGACATCCCCGCATCCAAGGGTTCCTCAAGGTGGCATGTACCCAAATGTGCCACCTTATTTCTGAGGACGTCTTTGTTCATGCTTCTGCGTGA

Protein Analysis

65

Amino Acids

7.06

Weight (kDa)

8.91

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AciI CCGC 2 cut(s) 53, 112
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 19, 52, 133
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 59
BccI CCATC 1 cut(s) 39
BciVI GTATCC 1 cut(s) 53
BfuI GTATCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 125
BmsI GCATC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 52, 133
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 106, 114
BseLI CCNNNNNNNGG 3 cut(s) 19, 52, 133
BseMII CTCAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 100
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 19, 52, 133
BsmFI GGGAC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 59
BspACI CCGC 2 cut(s) 53, 112
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 118
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 55, 98
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 106, 114
BstMWI GCNNNNNNNGC 2 cut(s) 70, 93
BstNSI RCATGY 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuI GTATCC 1 cut(s) 53
BtsCI GGATG 2 cut(s) 106, 114
Cac8I GCNNGC 2 cut(s) 55, 98
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 138, 182
CviJI RGCY 2 cut(s) 27, 100
CviKI_1 RGCY 2 cut(s) 27, 100
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 141, 185
FaiI YATR 3 cut(s) 75, 139, 183
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 137, 181
FauI CCCGC 2 cut(s) 46, 119
FokI GGATG 2 cut(s) 93, 101
GsaI CCCAGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 141, 185
HinfI GANTC 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 14, 80, 166
Hpy188III TCNNGA 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 93
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 141, 185
LpnPI CCDG 6 cut(s) 5, 20, 59, 79, 86, 106
LweI GCATC 1 cut(s) 123
MaeII ACGT 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 59
MnlI CCTC 4 cut(s) 20, 42, 137, 160
MwoI GCNNNNNNNGC 2 cut(s) 70, 93
NlaIII CATG 2 cut(s) 141, 185
NlaIV GGNNCC 1 cut(s) 125
NspI RCATGY 1 cut(s) 141
PfeI GAWTC 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 125
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 59
SetI ASST 6 cut(s) 24, 43, 102, 135, 159, 174
SfaNI GCATC 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SsiI CCGC 2 cut(s) 53, 112
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 174
TfiI GAWTC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 170
XceI RCATGY 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.