pycom03g18690

NUMOD3 motif (2 copies)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
19610249 .. 19612227
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1440 bp
ATGAAAATTACCGTGGATCATTTTTTTTCGGATGCAATCGACACACGAAACTGGTTAGGTTGCAGAAAGCCTTCAACAGGGGTTTTTATATTTCACCGGTTCTACACGCCACTAGCACTGCTGCCACATCAACTGCCTAATAACTTTCATCGCATCAGACTGCCAGAGCGATTACGGAATGAGACTTATGACTTAAATGAATCAATTGCTATAAATAATTTGTTCTTCTTTGAAATGCAACTTGAAGAAACATGCATATATCAACATTTTCACTTCTACTCATGCCAATCAAACACAATTTCTAAATTAGCCCCTTTATCACCGCGAACAAACCACCACCTCTCCCTGACCGTCGAATTAATCAGCGACGCCCCATCTCTTCTCCCTCTTCCTATCTTTTTTTCTCATATTTCCTCGATTTCTCTACTCTTACTTCGACATGGAAGCCGAAGGATGTTCGGCGGCAACTCAACCTCAAATCGGTGTGTCCAACCCCGTTCTAATTATGTTGAAGTGGTCGGCCTTCCTGTGTTCTTATCCTTTATGTCGTGCTCTGTGAGTGTGCACACAAAATTTGACTTCTATGTAGCGCCGAGTCCAAGGCAAAGACGTGTTCTTCACTCGGACGTCAAAATTTGTCTACTCTTACTTCGACATGGAAGCCGAAGGATGTTAGGCGGCAACTCAACCTCAAATTGGTGTGTCCAACCCCGTTCTAATTATGCTGAAGTGGTCGGCCTTCCTGTGTTCTTATCCTTTATGTCGTGCTCTGTGAGTGGTAGCGCCGAGTCCAAGGTAAAAACGCGTTCTTCACTCGGACGTGTTTGGGGCCGGCATTTGAAATGGAAACGGTTGCAGCTCGTCCCTGAATCAAAATTTGTCTACTCTTACTTCGACATGGAAGCCGAAGGATGTTCGACGGCAACTCAACCTCAAATCGGTGTGTCCAACCCCGTTCTAATTATGCTAAAGTGGTCGGCCTTCCTGTGTTCTTATCCTTTATGTCGTGTTCTCGCCGAGTCCAAGGTAAAGACGCGTTCTTCACTCGGACGTGTTTGGGGCCGGCATTTGAAATGGAAACGGTTGCAATCGTCCCTGAATCAAAATTTGTCTACTCTTACTTTGACATGGAAGCCGAAGGATGTTCGGCGACAACTCAACCTCAAATCGGTGTGTCCAACCCGTTCTAATTGTGCTGAAGTGGTCGGTTTTCCTGTGTTCTTATCCTTTATGTCGTGCTCTATGGGTGGTAGCGCCGAGTCCAAGGCAAAGACGCGTTCTTCACTTGGACGTGTTTGGGGACAGCGTTTGAAATGGAAACGGTTGAGGGAGAAATTTTTTATTTCATGGGTAGAAAGCATAGCAGAGGCGGCTGGTTTGGTATTGATGTGCTTTGAAAAAAAGCTGATTCTGTTATGCTGTGAGAATAAGCAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

54.78

Weight (kDa)

9.93

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 630
AccI GTMKAC 3 cut(s) 640, 882, 1112
AccII CGCG 4 cut(s) 325, 805, 1036, 1276
AciI CCGC 4 cut(s) 323, 462, 678, 1370
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 5 cut(s) 572, 633, 875, 1105, 1334
AcuI CTGAAG 2 cut(s) 747, 1218
AcyI GRCGYC 2 cut(s) 369, 627
AfiI CCNNNNNNNGG 5 cut(s) 77, 480, 696, 938, 1168
AflIII ACRYGT 7 cut(s) 610, 803, 820, 1034, 1051, 1274, 1291
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 8 cut(s) 75, 233, 245, 512, 841, 1072, 1312, 1397
AjiI CACGTC 4 cut(s) 611, 821, 1052, 1292
AluBI AGCT 3 cut(s) 859, 1405, 1435
AluI AGCT 3 cut(s) 859, 1405, 1435
Alw21I GWGCWC 4 cut(s) 554, 567, 770, 1241
Alw26I GTCTC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 1 cut(s) 24
AoxI GGCC 5 cut(s) 520, 736, 829, 978, 1060
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 3 cut(s) 121, 856, 1432
ApoI RAATTY 5 cut(s) 572, 633, 875, 1105, 1334
AseI ATTAAT 1 cut(s) 359
AsiGI ACCGGT 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 70
AspLEI GCGC 3 cut(s) 592, 785, 1256
AspS9I GGNCC 2 cut(s) 829, 1060
AsuHPI GGTGA 2 cut(s) 86, 312
BaeGI GKGCMC 1 cut(s) 567
Bbv12I GWGCWC 4 cut(s) 554, 567, 770, 1241
BbvI GCAGC 2 cut(s) 108, 868
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 936
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 113
BfoI RGCGCY 3 cut(s) 593, 786, 1257
BisI GCNGC 6 cut(s) 122, 463, 679, 857, 1371, 1433
BlsI GCNGC 6 cut(s) 123, 464, 680, 858, 1372, 1434
BmgBI CACGTC 4 cut(s) 611, 821, 1052, 1292
BmgT120I GGNCC 2 cut(s) 829, 1060
BmiI GGNNCC 2 cut(s) 830, 1061
BmsI GCATC 2 cut(s) 22, 162
BsaHI GRCGYC 2 cut(s) 369, 627
BsaJI CCNNGG 5 cut(s) 12, 599, 792, 1023, 1263
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 480, 696, 938, 1168
Bse118I RCCGGY 3 cut(s) 96, 831, 1062
Bse1I ACTGG 1 cut(s) 56
BseDI CCNNGG 5 cut(s) 12, 599, 792, 1023, 1263
BseGI GGATG 5 cut(s) 37, 459, 675, 917, 1147
BseLI CCNNNNNNNGG 5 cut(s) 77, 480, 696, 938, 1168
BseNI ACTGG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 2 cut(s) 108, 868
Bsh1236I CGCG 4 cut(s) 325, 805, 1036, 1276
BshFI GGCC 5 cut(s) 522, 738, 831, 980, 1062
BshTI ACCGGT 1 cut(s) 96
BsiHKAI GWGCWC 4 cut(s) 554, 567, 770, 1241
BsiSI CCGG 3 cut(s) 97, 832, 1063
BslFI GGGAC 3 cut(s) 848, 1078, 1314
BslI CCNNNNNNNGG 5 cut(s) 77, 480, 696, 938, 1168
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 3 cut(s) 848, 1078, 1314
BsnI GGCC 5 cut(s) 522, 738, 831, 980, 1062
Bsp1286I GDGCHC 4 cut(s) 554, 567, 770, 1241
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 4 cut(s) 323, 462, 678, 1370
BspANI GGCC 5 cut(s) 522, 738, 831, 980, 1062
BspFNI CGCG 4 cut(s) 325, 805, 1036, 1276
BspLI GGNNCC 2 cut(s) 830, 1061
BspPI GGATC 1 cut(s) 24
BsrFI RCCGGY 3 cut(s) 96, 831, 1062
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 3 cut(s) 96, 831, 1062
BssECI CCNNGG 5 cut(s) 12, 599, 792, 1023, 1263
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 2 cut(s) 369, 627
BssT1I CCWWGG 4 cut(s) 599, 792, 1023, 1263
Bst4CI ACNGT 5 cut(s) 13, 352, 852, 1083, 1323
Bst6I CTCTTC 2 cut(s) 384, 393
BstACI GRCGYC 2 cut(s) 369, 627
BstC8I GCNNGC 2 cut(s) 833, 1064
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 5 cut(s) 37, 459, 675, 917, 1147
BstFNI CGCG 4 cut(s) 325, 805, 1036, 1276
BstH2I RGCGCY 3 cut(s) 593, 786, 1257
BstHHI GCGC 3 cut(s) 592, 785, 1256
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 1370
BstNSI RCATGY 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 4 cut(s) 325, 805, 1036, 1276
BstV1I GCAGC 2 cut(s) 108, 868
BsuRI GGCC 5 cut(s) 522, 738, 831, 980, 1062
BtgI CCRYGG 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 134
BtrI CACGTC 4 cut(s) 611, 821, 1052, 1292
BtsCI GGATG 5 cut(s) 37, 459, 675, 917, 1147
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 833, 1064
CfoI GCGC 3 cut(s) 592, 785, 1256
Cfr10I RCCGGY 3 cut(s) 96, 831, 1062
Cfr13I GGNCC 2 cut(s) 829, 1060
CseI GACGC 3 cut(s) 377, 1042, 1282
CspAI ACCGGT 1 cut(s) 96
CviAII CATG 7 cut(s) 252, 282, 440, 656, 898, 1128, 1347
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 384, 393
EarI CTCTTC 2 cut(s) 384, 393
Eco130I CCWWGG 4 cut(s) 599, 792, 1023, 1263
Eco57I CTGAAG 2 cut(s) 747, 1218
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoT14I CCWWGG 4 cut(s) 599, 792, 1023, 1263
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 4 cut(s) 599, 792, 1023, 1263
FaeI CATG 7 cut(s) 255, 285, 443, 659, 901, 1131, 1350
FaqI GGGAC 3 cut(s) 848, 1078, 1314
FatI CATG 7 cut(s) 251, 281, 439, 655, 897, 1127, 1346
FblI GTMKAC 3 cut(s) 640, 882, 1112
Fnu4HI GCNGC 6 cut(s) 122, 463, 679, 857, 1371, 1433
FokI GGATG 5 cut(s) 44, 466, 682, 924, 1154
Fsp4HI GCNGC 6 cut(s) 122, 463, 679, 857, 1371, 1433
FspBI CTAG 1 cut(s) 113
GlaI GCGC 3 cut(s) 591, 784, 1255
GluI GCNGC 6 cut(s) 122, 463, 679, 857, 1371, 1433
HaeII RGCGCY 3 cut(s) 593, 786, 1257
HaeIII GGCC 5 cut(s) 522, 738, 831, 980, 1062
HapII CCGG 3 cut(s) 97, 832, 1063
HgaI GACGC 3 cut(s) 377, 1042, 1282
HhaI GCGC 3 cut(s) 592, 785, 1256
Hin1I GRCGYC 2 cut(s) 369, 627
Hin1II CATG 7 cut(s) 255, 285, 443, 659, 901, 1131, 1350
Hin6I GCGC 3 cut(s) 590, 783, 1254
HinP1I GCGC 3 cut(s) 590, 783, 1254
HinfI GANTC 8 cut(s) 200, 595, 788, 869, 1019, 1099, 1259, 1408
HpaII CCGG 3 cut(s) 97, 832, 1063
HphI GGTGA 2 cut(s) 86, 312
Hpy166II GTNNAC 4 cut(s) 565, 641, 883, 1113
Hpy188I TCNGA 5 cut(s) 31, 158, 625, 818, 1049
Hpy8I GTNNAC 4 cut(s) 565, 641, 883, 1113
Hpy99I CGWCG 3 cut(s) 356, 371, 922
HpyAV CCTTC 8 cut(s) 81, 444, 533, 660, 749, 902, 991, 1132
HpyCH4III ACNGT 5 cut(s) 13, 352, 852, 1083, 1323
HpyCH4IV ACGT 5 cut(s) 610, 627, 820, 1051, 1291
HpyCH4V TGCA 7 cut(s) 35, 63, 238, 255, 565, 856, 1087
HpyF10VI GCNNNNNNNGC 1 cut(s) 1370
HpySE526I ACGT 5 cut(s) 610, 627, 820, 1051, 1291
Hsp92I GRCGYC 2 cut(s) 369, 627
Hsp92II CATG 7 cut(s) 255, 285, 443, 659, 901, 1131, 1350
HspAI GCGC 3 cut(s) 590, 783, 1254
KroI GCCGGC 2 cut(s) 831, 1062
KroNI GCCGGC 2 cut(s) 833, 1064
Kzo9I GATC 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 108, 868
LweI GCATC 2 cut(s) 22, 162
MaeI CTAG 1 cut(s) 113
MaeII ACGT 5 cut(s) 610, 627, 820, 1051, 1291
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 8 cut(s) 217, 257, 371, 380, 608, 801, 1032, 1272
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 4 cut(s) 554, 567, 770, 1241
MluI ACGCGT 3 cut(s) 803, 1034, 1274
MlyI GAGTC 4 cut(s) 604, 797, 1028, 1268
MmeI TCCRAC 4 cut(s) 514, 730, 972, 1202
MnlI CCTC 9 cut(s) 350, 396, 424, 484, 700, 942, 1172, 1320, 1360
Mph1103I ATGCAT 1 cut(s) 257
MroNI GCCGGC 2 cut(s) 831, 1062
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 2 cut(s) 194, 359
MspA1I CMGCKG 1 cut(s) 1435
MspI CCGG 3 cut(s) 97, 832, 1063
MunI CAATTG 1 cut(s) 204
MvnI CGCG 4 cut(s) 325, 805, 1036, 1276
MwoI GCNNNNNNNGC 1 cut(s) 1370
NaeI GCCGGC 2 cut(s) 833, 1064
NdeII GATC 1 cut(s) 16
NgoMIV GCCGGC 2 cut(s) 831, 1062
NlaIII CATG 7 cut(s) 255, 285, 443, 659, 901, 1131, 1350
NlaIV GGNNCC 2 cut(s) 830, 1061
NmeAIII GCCGAG 4 cut(s) 618, 811, 1042, 1282
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 255
PdiI GCCGGC 2 cut(s) 833, 1064
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 4 cut(s) 200, 869, 1099, 1408
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 6 cut(s) 123, 464, 680, 858, 1372, 1434
PleI GAGTC 4 cut(s) 603, 796, 1027, 1267
PpsI GAGTC 4 cut(s) 603, 796, 1027, 1267
PshBI ATTAAT 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 830, 1061
PspPI GGNCC 2 cut(s) 829, 1060
PvuII CAGCTG 1 cut(s) 1435
SaqAI TTAA 2 cut(s) 194, 359
SatI GCNGC 6 cut(s) 122, 463, 679, 857, 1371, 1433
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 2 cut(s) 829, 1060
SchI GAGTC 4 cut(s) 604, 797, 1028, 1268
SduI GDGCHC 4 cut(s) 554, 567, 770, 1241
SfaNI GCATC 2 cut(s) 22, 162
SsiI CCGC 4 cut(s) 323, 462, 678, 1370
SspMI CTAG 1 cut(s) 113
StyI CCWWGG 4 cut(s) 599, 792, 1023, 1263
TaaI ACNGT 5 cut(s) 13, 352, 852, 1083, 1323
TaiI ACGT 5 cut(s) 613, 630, 823, 1054, 1294
TaqI TCGA 7 cut(s) 39, 354, 416, 436, 652, 894, 917
TauI GCSGC 3 cut(s) 465, 681, 1373
TfiI GAWTC 4 cut(s) 200, 869, 1099, 1408
Tru1I TTAA 2 cut(s) 194, 359
Tru9I TTAA 2 cut(s) 194, 359
TscAI CASTG 1 cut(s) 123
TseI GCWGC 3 cut(s) 121, 856, 1432
TspDTI ATGAA 4 cut(s) 17, 137, 213, 1335
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 123
VneI GTGCAC 1 cut(s) 563
VspI ATTAAT 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 5 cut(s) 572, 633, 875, 1105, 1334
XceI RCATGY 1 cut(s) 255
XmiI GTMKAC 3 cut(s) 640, 882, 1112
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 1 cut(s) 113
ZraI GACGTC 1 cut(s) 628
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.