pycom03g19040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
19810409 .. 19811108
700 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGACTGTATCGACTATTGCAATCTGCCCAACCTTTGAATCAATTCTTGCTCCACTATTATTTGGGGGGGTTTTTTTTTTTAATGAGAAAAACCACCAAGGTGGGAAATTCTGCTGTTTGGTTTGTTGCGCGTTAAGGAAGATGGGAGGGCTTCTTCAACACTGCAATTTGAAAAAAGCGTTTGTCTTTCAGTGTGACAATCGCATCGCCGCGTTAAGATTAAAGAATACAAATCTAGAACTTGCAAGGTTTCAATGGATGATCCAATACAACGGATTGACAGAAAATTGGACGGCCAGTGGATTGGATCTAAAGATCGATCTTAGTGGCGGAGCATTCAATAGCCCGGGGTATTATAGCTTCGCTGTCATATCTTGGGGTGAAAAAATCAAATCAATCTTTCATTCAAAGCCATTGAGATGTGACATGAATGTAAAATCGACCCCCTTCGACGTCTTACAATTATTTCTAAAATTTACATATATTAAAAACCGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.82

Weight (kDa)

9.28

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 456
AccII CGCG 2 cut(s) 131, 212
AciI CCGC 3 cut(s) 210, 330, 493
AclWI GGATC 2 cut(s) 256, 315
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 107, 473
AcyI GRCGYC 1 cut(s) 453
AgsI TTSAA 6 cut(s) 38, 158, 172, 254, 340, 408
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 1 cut(s) 360
AluI AGCT 1 cut(s) 360
AlwI GGATC 2 cut(s) 256, 315
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 1 cut(s) 294
ApoI RAATTY 2 cut(s) 107, 473
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 131
AsuC2I CCSGG 2 cut(s) 347, 348
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 346
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 309
BcnI CCSGG 2 cut(s) 347, 348
BfaI CTAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 347, 348
BmeT110I CYCGRG 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 347, 348
BmsI GCATC 1 cut(s) 213
BpuMI CCSGG 2 cut(s) 347, 348
Bsa29I ATCGAT 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 97, 346, 347
Bse1I ACTGG 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 3 cut(s) 97, 346, 347
BseGI GGATG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 297
Bsh1236I CGCG 2 cut(s) 131, 212
BshFI GGCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 1 cut(s) 347
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 346
Bsp143I GATC 4 cut(s) 261, 307, 315, 319
BspACI CCGC 3 cut(s) 210, 330, 493
BspANI GGCC 1 cut(s) 296
BspDI ATCGAT 1 cut(s) 318
BspFNI CGCG 2 cut(s) 131, 212
BspPI GGATC 2 cut(s) 256, 315
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 97, 346, 347
BssMI GATC 4 cut(s) 261, 307, 315, 319
BssNI GRCGYC 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 7
BstACI GRCGYC 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 2 cut(s) 131, 212
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 264, 310, 318, 322
BstMBI GATC 4 cut(s) 261, 307, 315, 319
BstSCI CCNGG 2 cut(s) 345, 346
BstUI CGCG 2 cut(s) 131, 212
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 2 cut(s) 101, 304
BstYI RGATCY 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 3 cut(s) 160, 197, 304
CfoI GCGC 1 cut(s) 131
Cfr9I CCCGGG 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 318
CviAII CATG 1 cut(s) 427
CviJI RGCY 5 cut(s) 151, 296, 345, 360, 412
CviKI_1 RGCY 5 cut(s) 151, 296, 345, 360, 412
DdeI CTNAG 1 cut(s) 323
DpnI GATC 4 cut(s) 263, 309, 317, 321
DpnII GATC 4 cut(s) 261, 307, 315, 319
EaeI YGGCCR 1 cut(s) 294
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 430
FaiI YATR 5 cut(s) 357, 371, 428, 481, 483
FatI CATG 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 347
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 1 cut(s) 430
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 392
Hpy188III TCNNGA 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 3 cut(s) 20, 165, 245
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 453
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 1 cut(s) 430
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 4 cut(s) 261, 307, 315, 319
LmnI GCTCC 2 cut(s) 55, 332
LpnPI CCDG 2 cut(s) 310, 360
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 194, 422
MalI GATC 4 cut(s) 263, 309, 317, 321
MboI GATC 4 cut(s) 261, 307, 315, 319
MboII GAAGA 2 cut(s) 146, 151
MflI RGATCY 1 cut(s) 307
MluCI AATT 6 cut(s) 42, 107, 166, 286, 461, 473
MnlI CCTC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 81, 134, 215, 221, 486
MslI CAYNNNNRTG 2 cut(s) 99, 418
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 2 cut(s) 347, 348
Mva1269I GAATGC 1 cut(s) 335
MvnI CGCG 2 cut(s) 131, 212
NciI CCSGG 2 cut(s) 347, 348
NdeII GATC 4 cut(s) 261, 307, 315, 319
NlaIII CATG 1 cut(s) 430
NmuCI GTSAC 2 cut(s) 194, 422
OliI CACNNNNGTG 1 cut(s) 99
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 99, 418
SaqAI TTAA 5 cut(s) 81, 134, 215, 221, 486
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 4 cut(s) 261, 307, 315, 319
ScrFI CCNGG 2 cut(s) 347, 348
SetI ASST 5 cut(s) 35, 103, 251, 362, 456
SfaNI GCATC 1 cut(s) 213
SmaI CCCGGG 1 cut(s) 348
SmiMI CAYNNNNRTG 2 cut(s) 99, 418
Sse9I AATT 6 cut(s) 42, 107, 166, 286, 461, 473
SsiI CCGC 3 cut(s) 210, 330, 493
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 345, 346
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 456
TaqI TCGA 4 cut(s) 11, 318, 440, 450
TasI AATT 6 cut(s) 42, 107, 166, 286, 461, 473
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 5 cut(s) 81, 134, 215, 221, 486
Tru9I TTAA 5 cut(s) 81, 134, 215, 221, 486
TscAI CASTG 3 cut(s) 167, 197, 304
TseFI GTSAC 2 cut(s) 194, 422
Tsp45I GTSAC 2 cut(s) 194, 422
TspDTI ATGAA 2 cut(s) 392, 443
TspGWI ACGGA 1 cut(s) 288
TspMI CCCGGG 1 cut(s) 346
TspRI CASTG 3 cut(s) 167, 197, 304
XapI RAATTY 2 cut(s) 107, 473
XbaI TCTAGA 1 cut(s) 235
XmaI CCCGGG 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 236
ZraI GACGTC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.