pycom03g19160

Alpha-1,3 1,6-mannosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
N/A
Physical Location & Seq
Forward (+)
19865038 .. 19866446
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 990 bp
ATGGAAGACTGCGAGGATATGTATATTATCTTTAGCATTAGGTTTTACTTTAGAGGGGTTTACTTCTTTTTTAAGAAGGGTAAGGTTTATGTCCCCCCTCTTTTCTTGTATTTTTTTTATTACTTTATAAGGGGTGATGTTTATGTCGCCTTACTAAGTAGTGCAAACTATGGGATGAACTCTTATTACAATGAATGCAATGTCAGAGCATTGATAAACGTAGAAACAACTTCCTACATTATCCGAAGTGAATGTCAGAAATTGCTAGTGATTCTCGTCTCCACCATGGGCAAAAGTAAAAGTTTTCTAAAACCTTGCTTTTTGGAATTAGTAACCCCTTGCTATAAAGACCAGTATGGTGGTTTTCCAAATAGGAGAGACTTACCCCGGGGGATTCAGAGGGCAGGGCACGACCGAAGGCTTCATAACTGTTTTTATGTGATGTTTGTAAATCTTGCCATGACTATTATCTTAAAAAATAAAAATATTGTTGTTGTTACATGTAAATTTATCTGCTCATCTACACATACTTTCACTTGTGCTGTACCTGTTTTGCGGCTGGGAGATGCTTCACGTGTATGTTCAACTGGTAGTTTACTGTTTTTTTTTCCTGCTTTGGCTAAATTTTCTATCAATCGTTTTGAGAGGAAAAAGAATATAGACCTGGCAATATCAGCTTTTGCTTTGCTTCGTCTGGCTGAATCTTCCTTGACAATTGCAGGCAAGTTCTATAGGGTATGCGTGTTCCTTCATTACCTTATGTTGCTGTTGAAGACTGTTTATATATTAGTTAGGCTATCAATAACCAATTGCGTGTTCAGAGCTTTACGGATCTTGCAATTTAACATTAGTATCTGGATGTCAAAAGACATTCTTCTGTGTTTTTCTTGGCTTAGACCCATAGTCACGCCTAGAATTGTTATTTATGAGAAAAAAAAAGTGTACATAATCCAAATAGCAATGAACTATTGTGCTGTTATCCTACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Glyco_transf_4 Glycos_transf_1

Protein Analysis

330

Amino Acids

38.38

Weight (kDa)

9.64

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AciI CCGC 1 cut(s) 556
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 2 cut(s) 506, 623
AcvI CACGTG 1 cut(s) 575
AfaI GTAC 2 cut(s) 546, 944
AflIII ACRYGT 2 cut(s) 500, 574
AgsI TTSAA 2 cut(s) 585, 772
AhdI GACNNNNNGTC 1 cut(s) 902
AjnI CCWGG 1 cut(s) 663
AjuI GAANNNNNNNTTGG 2 cut(s) 800, 832
AluBI AGCT 2 cut(s) 677, 824
AluI AGCT 2 cut(s) 677, 824
Alw26I GTCTC 2 cut(s) 283, 372
AlwI GGATC 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 387
ApoI RAATTY 2 cut(s) 506, 623
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AsuC2I CCSGG 2 cut(s) 388, 389
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 411
BaeI ACNNNNGTAYC 2 cut(s) 835, 868
BbrPI CACGTG 1 cut(s) 575
BbsI GAAGAC 2 cut(s) 12, 779
BciT130I CCWGG 1 cut(s) 665
BcnI CCSGG 2 cut(s) 388, 389
BcoDI GTCTC 2 cut(s) 283, 372
BfaI CTAG 2 cut(s) 266, 912
BfmI CTRYAG 1 cut(s) 730
BisI GCNGC 1 cut(s) 557
BlsI GCNGC 1 cut(s) 558
Bme1390I CCNGG 3 cut(s) 388, 389, 665
BmeRI GACNNNNNGTC 1 cut(s) 902
BmeT110I CYCGRG 1 cut(s) 387
BmrFI CCNGG 3 cut(s) 388, 389, 665
BmsI GCATC 1 cut(s) 556
BpiI GAAGAC 2 cut(s) 12, 779
BpuMI CCSGG 2 cut(s) 388, 389
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 4 cut(s) 285, 386, 387, 388
Bse1I ACTGG 2 cut(s) 352, 592
Bse3DI GCAATG 2 cut(s) 205, 966
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 4 cut(s) 285, 386, 387, 388
BseGI GGATG 2 cut(s) 180, 864
BseMI GCAATG 2 cut(s) 205, 966
BseNI ACTGG 2 cut(s) 352, 592
BseSI GKGCMC 1 cut(s) 411
BseYI CCCAGC 1 cut(s) 559
Bsh1285I CGRYCG 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 283, 372
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 411
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 1 cut(s) 831
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 556
BspPI GGATC 1 cut(s) 839
BsrDI GCAATG 2 cut(s) 205, 966
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 2 cut(s) 352, 592
BssECI CCNNGG 4 cut(s) 285, 386, 387, 388
BssMI GATC 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 4 cut(s) 431, 600, 778, 987
BstAUI TGTACA 1 cut(s) 942
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 2 cut(s) 155, 893
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 180, 864
BstKTI GATC 1 cut(s) 834
BstMAI GTCTC 2 cut(s) 283, 372
BstMBI GATC 1 cut(s) 831
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 3 cut(s) 386, 387, 663
BstSFI CTRYAG 1 cut(s) 730
BstSLI GKGCMC 1 cut(s) 411
BstV2I GAAGAC 2 cut(s) 12, 779
BstX2I RGATCY 1 cut(s) 831
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 1 cut(s) 831
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 180, 864
Cac8I GCNNGC 1 cut(s) 721
Cfr9I CCCGGG 1 cut(s) 387
Csp6I GTAC 2 cut(s) 545, 943
CviAII CATG 3 cut(s) 286, 460, 501
CviJI RGCY 8 cut(s) 421, 559, 620, 677, 698, 796, 824, 892
CviKI_1 RGCY 8 cut(s) 421, 559, 620, 677, 698, 796, 824, 892
CviQI GTAC 2 cut(s) 545, 943
DdeI CTNAG 2 cut(s) 155, 893
DpnI GATC 1 cut(s) 833
DpnII GATC 1 cut(s) 831
DriI GACNNNNNGTC 1 cut(s) 902
Eam1105I GACNNNNNGTC 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 3 cut(s) 289, 463, 504
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 1 cut(s) 77
FatI CATG 3 cut(s) 285, 459, 500
Fnu4HI GCNGC 1 cut(s) 557
FokI GGATG 2 cut(s) 187, 871
Fsp4HI GCNGC 1 cut(s) 557
FspBI CTAG 2 cut(s) 266, 912
GluI GCNGC 1 cut(s) 557
GsaI CCCAGC 1 cut(s) 563
HapII CCGG 1 cut(s) 388
Hin1II CATG 3 cut(s) 289, 463, 504
HinfI GANTC 3 cut(s) 271, 394, 701
HpaII CCGG 1 cut(s) 388
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 3 cut(s) 61, 596, 943
Hpy188I TCNGA 5 cut(s) 206, 245, 258, 399, 821
Hpy188III TCNNGA 1 cut(s) 856
Hpy8I GTNNAC 3 cut(s) 61, 596, 943
HpyAV CCTTC 3 cut(s) 70, 411, 758
HpyCH4III ACNGT 4 cut(s) 431, 600, 778, 987
HpyCH4IV ACGT 2 cut(s) 219, 574
HpyCH4V TGCA 4 cut(s) 164, 198, 719, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 2 cut(s) 155, 893
HpySE526I ACGT 2 cut(s) 219, 574
Hsp92II CATG 3 cut(s) 289, 463, 504
Kzo9I GATC 1 cut(s) 831
LweI GCATC 1 cut(s) 556
MaeI CTAG 2 cut(s) 266, 912
MaeII ACGT 2 cut(s) 219, 574
MaeIII GTNAC 3 cut(s) 331, 496, 904
MalI GATC 1 cut(s) 833
MboI GATC 1 cut(s) 831
MboII GAAGA 4 cut(s) 17, 696, 784, 866
MfeI CAATTG 2 cut(s) 714, 808
MflI RGATCY 1 cut(s) 831
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 8 cut(s) 260, 326, 506, 623, 714, 808, 839, 915
MnlI CCTC 5 cut(s) 7, 47, 108, 393, 639
MseI TTAA 3 cut(s) 72, 473, 843
MslI CAYNNNNRTG 1 cut(s) 577
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 3 cut(s) 388, 389, 665
MunI CAATTG 2 cut(s) 714, 808
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 1 cut(s) 674
NciI CCSGG 2 cut(s) 388, 389
NcoI CCATGG 1 cut(s) 285
NdeII GATC 1 cut(s) 831
NlaIII CATG 3 cut(s) 289, 463, 504
NmuCI GTSAC 1 cut(s) 904
NspI RCATGY 1 cut(s) 504
PciI ACATGT 1 cut(s) 500
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 3 cut(s) 271, 394, 701
PkrI GCNGC 1 cut(s) 558
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
Ppu21I YACGTR 1 cut(s) 575
PscI ACATGT 1 cut(s) 500
PsiI TTATAA 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 663
PspCI CACGTG 1 cut(s) 575
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 1 cut(s) 663
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
PsuI RGATCY 1 cut(s) 831
RsaI GTAC 2 cut(s) 546, 944
RsaNI GTAC 2 cut(s) 545, 943
RseI CAYNNNNRTG 1 cut(s) 577
SaqAI TTAA 3 cut(s) 72, 473, 843
SatI GCNGC 1 cut(s) 557
Sau3AI GATC 1 cut(s) 831
ScrFI CCNGG 3 cut(s) 388, 389, 665
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 730
SmaI CCCGGG 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 577
Sse9I AATT 8 cut(s) 260, 326, 506, 623, 714, 808, 839, 915
SsiI CCGC 1 cut(s) 556
SspI AATATT 1 cut(s) 487
SspMI CTAG 2 cut(s) 266, 912
StyD4I CCNGG 3 cut(s) 386, 387, 663
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 4 cut(s) 431, 600, 778, 987
TaiI ACGT 2 cut(s) 222, 577
TaqII GACCGA 1 cut(s) 429
TasI AATT 8 cut(s) 260, 326, 506, 623, 714, 808, 839, 915
TatI WGTACW 1 cut(s) 942
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 3 cut(s) 271, 394, 701
Tru1I TTAA 3 cut(s) 72, 473, 843
Tru9I TTAA 3 cut(s) 72, 473, 843
TseFI GTSAC 1 cut(s) 904
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 5 cut(s) 191, 207, 413, 740, 977
TspGWI ACGGA 1 cut(s) 844
TspMI CCCGGG 1 cut(s) 387
XapI RAATTY 2 cut(s) 506, 623
XceI RCATGY 1 cut(s) 504
XmaI CCCGGG 1 cut(s) 387
XspI CTAG 2 cut(s) 266, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.